Browse Element(s) Details


Os.6230.1.S1_at

Description gb:AK066129.1
DB_XREF= gi:32976147
TID=Os.6230.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-039-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051M12, full insert sequence.
FL= gb:AK066129.1 gb:AK105046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6435011/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed
LOC_Os03g64370NANA3+36323925..36325847pentatricopeptide, putative
LOC_Os03g64380Os.49921.1.S1_at9/113+36326846..36328475expressed protein
LOC_Os03g64390NANA3+36329138..36330337hypothetical protein
LOC_Os03g64400Os.16535.1.S1_at10/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.24152.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.20956.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.988.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.23696.1.S1_x_at1/113+36333707..36340637expressed protein
LOC_Os03g64415Os.14671.1.S1_at6/113+36341423..36344422Kinesin-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6230.1.S1_at--992--411Chr03:36315754..36315778 (25 bp)
ATCATCTCCATCCTAGCTTACTAGT
LOC_Os03g64350
Os.6230.1.S1_at--235--3711Chr03:36315734..36315758 (25 bp)
CTAGTATAGTACTCCATGCTGCCAT
LOC_Os03g64350
Os.6230.1.S1_at--858--10751Chr03:36315691..36315715 (25 bp)
TTGGATTTTCCTGTTGTTTCCTGCA
LOC_Os03g64350
Os.6230.1.S1_at--610--9811Chr03:36315662..36315686 (25 bp)
TAACTGTGCGTGTAGTCTCATCTGT
LOC_Os03g64350
Os.6230.1.S1_at--597--3651Chr03:36315610..36315634 (25 bp)
CTTCTTTCAGCTTCAGTTGGTACCA
LOC_Os03g64350
Os.6230.1.S1_at--183--6611Chr03:36315595..36315619 (25 bp)
GTTGGTACCAAAGCTGACTCACCTC
LOC_Os03g64350
Os.6230.1.S1_at--760--5831Chr03:36315564..36315588 (25 bp)
GACCTTCTCTTAATTTTCCTCTTGG
LOC_Os03g64350
Os.6230.1.S1_at--1043--1671Chr03:36315537..36315561 (25 bp)
AGCCTCCTCTTTACTTTCGGTGGAT
LOC_Os03g64350
Os.6230.1.S1_at--817--7711Chr03:36315519..36315543 (25 bp)
GGTGGATTCCTATGTATAGTCCCTT
LOC_Os03g64350
Os.6230.1.S1_at--113--151Chr03:36315474..36315498 (25 bp)
ATTAGGGACACGTCTACACGGCGAC
LOC_Os03g64350
Os.6230.1.S1_at--1011--2711Chr03:36315397..36315421 (25 bp)
AAGCACTTTGCATGGATGTACCCCG
LOC_Os03g64350
Target Sequence 
ATCATCTCCATCCTAGCTTACTAGTATAGTACTCCATGCTGCCATGCATTTGGATGGATTGGATTGGATTTTCCTGTTGT
TTCCTGCACGCTTAACTGTGCGTGTAGTCTCATCTGTCATGCCCCAAGTCTCAAATCTGCCTGCCTTCTTTCAGCTTCAG
TTGGTACCAAAGCTGACTCACCTCCACGACGACCTTCTCTTAATTTTCCTCTTGGCCAGCCTCCTCTTTACTTTCGGTGG
ATTCCTATGTATAGTCCCTTTATTGATTATGTATATTTTGATTAGGGACACGTCTACACGGCGACCACTTCATCCCAAGT
GTAAACCCTCCTTTTCAGCTTCTAAAAATAGCAAAAGAAGCACTTTGCATGGATGTACCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis