Browse Element(s) Details


Os.16535.1.S1_at

Description gb:AK066909.1
DB_XREF= gi:32976927
TID=Os.16535.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091E19, full insert sequence.
FL= gb:AK066909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6440010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed
LOC_Os03g64370NANA3+36323925..36325847pentatricopeptide, putative
LOC_Os03g64380Os.49921.1.S1_at9/113+36326846..36328475expressed protein
LOC_Os03g64390NANA3+36329138..36330337hypothetical protein
LOC_Os03g64400Os.16535.1.S1_at10/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.24152.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.20956.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.988.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.23696.1.S1_x_at1/113+36333707..36340637expressed protein
LOC_Os03g64415Os.14671.1.S1_at6/113+36341423..36344422Kinesin-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16535.1.S1_at--1032--331Chr03:36340045..36340069 (25 bp)
ATACAGCATGTGAGGTCTTTCATCT
LOC_Os03g64400
Os.16535.1.S1_at--873--5151Chr03:36340096..36340120 (25 bp)
GCAACGCAGCGATTTACAGATCTAG
LOC_Os03g64400
Os.16535.1.S1_at--21--2991Chr03:36340171..36340195 (25 bp)
AATGTCTACGTGTTTGGTTCAACCA
LOC_Os03g64400
Os.16535.1.S1_at--439--6131Chr03:36340234..36340258 (25 bp)
GAGGGCCTGGAGAAGTTTGTACACA
LOC_Os03g64400
Os.16535.1.S1_at--994--10431NONE
TTAGTGTCTACACCCACAGTTGATA
NONE
Os.16535.1.S1_at--459--9851Chr03:36340357..36340381 (25 bp)
TAAATTCCTCCATGAGTGCTGCTGC
LOC_Os03g64400
Os.16535.1.S1_at--819--331Chr03:36340449..36340473 (25 bp)
ATAAGCCTTGTTCTGTAATGTAATG
LOC_Os03g64400
Os.16535.1.S1_at--1060--3451Chr03:36340497..36340521 (25 bp)
CAGTGAGTCTCCTTGAATGTTACTT
LOC_Os03g64400
Os.16535.1.S1_at--704--2191Chr03:36340526..36340550 (25 bp)
ACAAATGCGATCACTCTTCGGATTC
LOC_Os03g64400
Os.16535.1.S1_at--361--10131Chr03:36340542..36340566 (25 bp)
TTCGGATTCCGAACGATCCTCGTTT
LOC_Os03g64400
Os.16535.1.S1_at--894--151Chr03:36340611..36340635 (25 bp)
ATTATGCTGCTTCGCGTCTTTTTGA
LOC_Os03g64400
Target Sequence 
ATACAGCATGTGAGGTCTTTCATCTCAATTCTAAAGCAGGGAGCAGAAGAAGCAACGCAGCGATTTACAGATCTAGGGGC
TGCTGCAGCTTTGAAGGCAAAGAAGTTGTNCATCCGAAGCACAGGACAATGTCTACGTGTTTGGTTCAACCATTGGGGAT
AAGTCGAAGAGGGTGNGTGGAGGACTGCAAAGAGGGCCTGGAGAAGTTTGTACACAGATTCAAGACAGACTAGCCAGTAA
CTATTAGTGTCTACACCCACAGTTGATAGTTCCTGTCAAACTTGAGAAAGAGGAACCGTATTAGTTTCTTGGAATAAATT
CCTCCATGAGTGCTGCTGCTCAGGTGTGGTGGACTGGTGGTGTTGTAAAGTATTGAAACTGAAACTAGCACAGAAGGTTC
CATAGAATAAGCCTTGTTCTGTAATGTAATGGAATCCAAAAAGAGCAAGGCAGACAGTGAGTCTCCTTGAATGTTACTTA
GACACAAATGCGATCACTCTTCGGATTCCGAACGATCCTCGTTTTTTTTCTGAGCAGGAAAGAAATGCTTTAAGCNTGTA
AGTTCCCNAATTATGCTGCTTCGCGTCTTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis