Browse Element(s) Details


Os.49921.1.S1_at

Description gb:AK119361.1
DB_XREF= gi:37988984
TID=Os.49921.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G07, full insert sequence.
FL= gb:AK119361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g643809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed
LOC_Os03g64370NANA3+36323925..36325847pentatricopeptide, putative
LOC_Os03g64380Os.49921.1.S1_at9/113+36326846..36328475expressed protein
LOC_Os03g64390NANA3+36329138..36330337hypothetical protein
LOC_Os03g64400Os.16535.1.S1_at10/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.24152.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.20956.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.988.1.S1_at1/113+36333707..36340637expressed protein
LOC_Os03g64400OsAffx.23696.1.S1_x_at1/113+36333707..36340637expressed protein
LOC_Os03g64415Os.14671.1.S1_at6/113+36341423..36344422Kinesin-1, putative

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Gene Ontology Classification
GO idTypeName
GO:0006606biological_processprotein import into nucleus
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49921.1.S1_at--247--6091Chr03:36327446..36327470 (25 bp)
GAGTCACCAGTGAAACCATGCAAGT
LOC_Os03g64380
Os.49921.1.S1_at--40--1711Chr03:36327300..36327324 (25 bp)
ACCAACTTGTTTGACACATTCCCGA
LOC_Os03g64380
Os.49921.1.S1_at--775--5191Chr03:36327159..36327183 (25 bp)
GCAATACAGCCCTTTGTGAGGCTTT
LOC_Os03g64380
Os.49921.1.S1_at--297--6211Chr03:36327142..36327166 (25 bp)
GAGGCTTTACAAGTCCTTCGTGAAG
LOC_Os03g64380
Os.49921.1.S1_at--152--10391Chr03:36327116..36327139 (24 bp)
TTTTCATCGTCCCTTTTCTTGCATA
LOC_Os03g64380
Os.49921.1.S1_at--303--9571Chr03:36327100..36327124 (25 bp)
TCTTGCATACTATACCCACTTTTGG
LOC_Os03g64380
Os.49921.1.S1_at--859--4291Chr03:36327085..36327109 (25 bp)
CCACTTTTGGACATACTTGGCTAAA
LOC_Os03g64380
Os.49921.1.S1_at--392--231Chr03:36326963..36326987 (25 bp)
ATATACGTACCTTATCTGTGCACAA
LOC_Os03g64380
Os.49921.1.S1_at--1015--6291Chr03:36326872..36326896 (25 bp)
GATGATGTCATGTCGTTGCCAGAAG
LOC_Os03g64380
Os.49921.1.S1_at--1099--8691Chr03:36326840..36326864 (25 bp)
TGTCCATTCTCCTGCCTAGAAAGAG
NONE
Os.49921.1.S1_at--983--10191Chr03:36326715..36326739 (25 bp)
TATTTGCACCGTAACATTTTCCCTG
NONE
Target Sequence 
GAGTCACCAGTGAAACCATGCAAGTTTTCACTGGAAATACTAAATATCGCTACCAACTTGTTTGACACATTCCCGAATAT
AGCTGAAGGTTTATTAAATAATCCAGAACAAGCAATACAGCCCTTTGTGAGGCTTTACAAGTCCTTCGTGAAGCTTTTCA
TCGTCCCTTTTCTTGCATACTATACCCACTTTTGGACATACTTGGCTAAAGTATTGACTATGATGCTCCATTTGTTGTAT
AGAATAATCAAATGGTATGTTTAAAGACTAGAATGACTGAAAAGTCCATATTGTGAAAATAGAAATTATATACGTACCTT
ATCTGTGCACAAACAATTACAGGTAGCCAAACAAGAAAGGGGACTGTATGGGGACTACCAATGGATCAGAACTTTTCAGA
TGATGTCATGTCGTTGCCAGAAGTTTATCTTGTCCATTCTCCTGCCTAGAAAGAGTGAACATCATTTCGTTTTTAAGGAA
TTTACCGTTACTCTATTAGTATAAAACTGTAGATAATCTCTGGAAATGGTTGTAAGCAAGTGTTGAACATTATCATATTT
GCACCGTAACATTTTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis