Browse Element(s) Details


OsAffx.13601.1.S1_at

Description tigr:9631.m06381
TID=OsAffx.13601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative heavy-metal-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6434011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64300Os.12770.1.S1_at11/113+36279017..36285874Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os03g64310Os.12770.2.S1_x_at11/113+36284692..36285887expressed protein
LOC_Os03g64310Os.12770.3.A1_at10/113+36284692..36285887expressed protein
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed
LOC_Os03g64370NANA3+36323925..36325847pentatricopeptide, putative
LOC_Os03g64380Os.49921.1.S1_at9/113+36326846..36328475expressed protein
LOC_Os03g64390NANA3+36329138..36330337hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0046916biological_processtransition metal ion homeostasis
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13601.1.S1_at--625--5091Chr03:36305846..36305870 (25 bp)
GCACAGGCAAGCTCGCCACGGTCGT
LOC_Os03g64340
OsAffx.13601.1.S1_at--680--3811Chr03:36305753..36305777 (25 bp)
CTCCTGCAGCCGAAGCTGACAAGAA
LOC_Os03g64340
OsAffx.13601.1.S1_at--720--5291Chr03:36305611..36305635 (25 bp)
GAAGGCAGCAGCGATTGCGAATAAT
LOC_Os03g64340
OsAffx.13601.1.S1_at--529--8991Chr03:36305528..36305552 (25 bp)
TGAAGCGGATGCACTTGTACTGGCC
LOC_Os03g64340
OsAffx.13601.1.S1_at--155--7991Chr03:36305522..36305546 (25 bp)
GGATGCACTTGTACTGGCCGCCGTA
LOC_Os03g64340
OsAffx.13601.1.S1_at--550--6991Chr03:36305500..36305524 (25 bp)
GTACGGGCACGGCTACACGAGTTAC
LOC_Os03g64340
OsAffx.13601.1.S1_at--214--8251Chr03:36305495..36305519 (25 bp)
GGCACGGCTACACGAGTTACTACCA
LOC_Os03g64340
OsAffx.13601.1.S1_at--923--9631Chr03:36305446..36305470 (25 bp)
TCAGGCTCACCCCTGTGCAAATCTT
LOC_Os03g64340
OsAffx.13601.1.S1_at--306--7351Chr03:36305432..36305456 (25 bp)
GTGCAAATCTTCACTCGTGGGTGCC
LOC_Os03g64340
OsAffx.13601.1.S1_at--410--2271Chr03:36305428..36305452 (25 bp)
AAATCTTCACTCGTGGGTGCCTCCA
LOC_Os03g64340
OsAffx.13601.1.S1_at--484--1511Chr03:36305364..36305388 (25 bp)
AGCAGCTACGTCATGCTGGACCGAC
LOC_Os03g64340
Target Sequence 
GCACAGGCAAGCTCGCCACGGTCGTCGTGCCCCCGCCCCCAAAGCCCAAGGAGGAGGAGGAGGAGAAGACCAACGACGAC
AAGCCTCCTCCTCCTCCTGCAGCCGAAGCTGACAAGAAAGATGAGGAAAATAAGCCGGCGGCGGAAGACGGCAGCAGCAA
GCTGCAGAATGAAGCAGAGGGCAACGCCAACAAGGAAGCAGCAGCAGCAGCAGAGGAGGAGGCGCCCGAGGAGGAGAAGG
CAGCAGCGATTGCGAATAATAAGCAGCAGCAGGAGGATGGTTCGGTGGTGGTGGAGGGGTTCCCGCCGGAGGAGATGATG
AAGCGGATGCACTTGTACTGGCCGCCGTACGGGCACGGCTACACGAGTTACTACCACCACCACCACCACCACCAGGGCGG
TCAGGCTCACCCCTGTGCAAATCTTCACTCGTGGGTGCCTCCACCACCACCACCACCACCACCTCCTCCTCCTGTGTACT
ACAGCAGCTACGTCATGCTGGACCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis