Browse Element(s) Details


Os.55938.1.S1_at

Description gb:AK109024.1
DB_XREF= gi:32994233
TID=Os.55938.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-B04, full insert sequence.
FL= gb:AK109024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6433011/11aquaporin PIP2.8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed
LOC_Os03g64300Os.12770.1.S1_at11/113+36279017..36285874Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os03g64310Os.12770.2.S1_x_at11/113+36284692..36285887expressed protein
LOC_Os03g64310Os.12770.3.A1_at10/113+36284692..36285887expressed protein
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed
LOC_Os03g64350Os.6230.1.S1_at11/113+36315337..36320471Rhodanese-like domain containing protein, expressed
LOC_Os03g64360Os.5298.1.S1_a_at11/113+36320675..36323432F-box domain containing protein, expressed
LOC_Os03g64370NANA3+36323925..36325847pentatricopeptide, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55938.1.S1_at--1050--9471Chr03:36300193..36300217 (25 bp)
TCTCGGCGACGGACCCGAAGCGGAA
LOC_Os03g64330
Os.55938.1.S1_at--755--4171Chr03:36300206..36300230 (25 bp)
CCCGAAGCGGAAGGCCAGGGACTCT
LOC_Os03g64330
Os.55938.1.S1_at--394--9131Chr03:36300271..36300295 (25 bp)
TGCTGGTTGTGCACCTTGCCACCAT
LOC_Os03g64330
Os.55938.1.S1_at--1109--8591Chr03:36300375..36300399 (25 bp)
TGGTCCCACCTCTGGATCTTCTGGG
LOC_Os03g64330
Os.55938.1.S1_at--950--4511Chr03:36300423..36300447 (25 bp)
GCCGCAATGATCTACCATCACTACA
LOC_Os03g64330
Os.55938.1.S1_at--605--451Chr03:36300432..36300456 (25 bp)
ATCTACCATCACTACATCCTCAGGG
LOC_Os03g64330
Os.55938.1.S1_at--530--371Chr03:36300494..36300518 (25 bp)
ATCACCCCATTTTTAATCCCATGCA
LOC_Os03g64330
Os.55938.1.S1_at--120--551Chr03:36300509..36300533 (25 bp)
ATCCCATGCACCCTTGCAATATATT
LOC_Os03g64330
Os.55938.1.S1_at--70--171Chr03:36300536..36300560 (25 bp)
ATTATTCTTCGATCTACTGTTTTAA
LOC_Os03g64330
Os.55938.1.S1_at--592--551Chr03:36300579..36300603 (25 bp)
ATCCGTAATTCATCTGTACTGTCTG
LOC_Os03g64330
Os.55938.1.S1_at--88--7011Chr03:36300594..36300618 (25 bp)
GTACTGTCTGTACGTAATCTAGCTA
LOC_Os03g64330
Target Sequence 
TCTCGGCGACGGACCCGAAGCGGAAGGCCAGGGACTCTCACGTGCCGGTGCTGGCGCCGCTTCCCATCGGGTTGGCGGTG
CTGGTTGTGCACCTTGCCACCATCCCCATCACCGGCACTGGCATCAACCCCGCCCGCAGCCTTGGCCCCGCCCTCGTCCT
CGGCCTCGGCACCACCAAGGCCTGGTCCCACCTCTGGATCTTCTGGGTGGGCCCCTTCGCCGGCGCCGCCGCCGCAATGA
TCTACCATCACTACATCCTCAGGGGCGCTGCCGCCAAGGCCTTCGCCTCCTCCTCCTACCGATCACCCCATTTTTAATCC
CATGCACCCTTGCAATATATTTTATTATTCTTCGATCTACTGTTTTAATTTGTTTTTTATAATTATATCCGTAATTCATC
TGTACTGTCTGTACGTAATCTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis