Browse Element(s) Details


Os.12770.3.A1_at

Description gb:AK111687.1
DB_XREF= gi:37988350
TID=Os.12770.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079A15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002L15, full insert sequence.
FL= gb:AK111687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6431010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g64290NANA3+36258864..36275639Myosin head family protein, expressed
LOC_Os03g64300Os.12770.1.S1_at11/113+36279017..36285874Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os03g64310Os.12770.2.S1_x_at11/113+36284692..36285887expressed protein
LOC_Os03g64310Os.12770.3.A1_at10/113+36284692..36285887expressed protein
LOC_Os03g64320Os.17148.1.A1_at11/113+36286777..36297543expressed protein
LOC_Os03g64330Os.55938.1.S1_at11/113+36299579..36300677aquaporin PIP2.8, putative, expressed
LOC_Os03g64340OsAffx.13601.1.S1_at11/113+36305302..36306704heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12770.3.A1_at--139--151NONE
ATTACGGGCTGCCTTCTGTAACGAA
NONE
Os.12770.3.A1_at--485--1891Chr03:36285154..36285178 (25 bp)
ACGTACGCACGTCTGGGAAGCTATG
LOC_Os03g64310
Os.12770.3.A1_at--930--2791Chr03:36285128..36285152 (25 bp)
AAGTTAAGATTCTGGCAGCCGTCGC
LOC_Os03g64310
Os.12770.3.A1_at--801--5031Chr03:36285032..36285056 (25 bp)
GCAGAAGCTATCATCCCAGTGAACT
LOC_Os03g64310
Os.12770.3.A1_at--741--10171Chr03:36284988..36285012 (25 bp)
TATAAGGCCTTCATGTGCCTGGACC
LOC_Os03g64310
Os.12770.3.A1_at--180--3911Chr03:36284970..36284994 (25 bp)
CTGGACCGTGTTTCTGTGATTATCT
LOC_Os03g64310
Os.12770.3.A1_at--505--7411Chr03:36284955..36284979 (25 bp)
GTGATTATCTGACAAGCTCCATAGC
LOC_Os03g64310
Os.12770.3.A1_at--640--291Chr03:36284935..36284959 (25 bp)
ATAGCTCCATCGTCTGCACAAATGA
LOC_Os03g64310
Os.12770.3.A1_at--109--411Chr03:36284895..36284919 (25 bp)
ATCAGTTGCCATTCCGACGGTTAAA
LOC_Os03g64310
Os.12770.3.A1_at--831--7311Chr03:36284780..36284804 (25 bp)
GTGCTCGGCTATTTACATTGATACC
LOC_Os03g64310
Os.12770.3.A1_at--809--3371Chr03:36284756..36284780 (25 bp)
CACCAGGGCGGTCAATGCTTTGTGA
LOC_Os03g64310
Target Sequence 
ATTACGGGCTGCCTTCTGTAACGAAGCCAACGAATCAAAAATAAACAACACAAACTCTATACGTACGCACGTCTGGGAAG
CTATGCAAGTTAAGATTCTGGCAGCCGTCGCGCTGAGGCCCCTTCTCCTCTTCATCTCCAATCCTTCTTCATTTCCACAG
TTTCACGGATCTGTCATGGCTCGCAGAAGCTATCATCCCAGTGAACTGAGAGTGCGCCAAAGCAGCTATAAGGCCTTCAT
GTGCCTGGACCGTGTTTCTGTGATTATCTGACAAGCTCCATAGCTCCATCGTCTGCACAAATGACACCAAAGACCATCAA
TCAGTTGCCATTCCGACGGTTAAAAGTCTTTTGGACACACAAGACATATTATCGAGGAGGAGCAATTTGTCTAAGAAATT
AATATAGGTAGCACTTTCTTAAGACATGTAATATGTGCTCGGCTATTTACATTGATACCACCAGGGCGGTCAATGCTTTG
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12770.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis