Browse Element(s) Details


Os.12864.4.S1_x_at

Description gb:AK111922.1
DB_XREF= gi:37988585
TID=Os.12864.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12864 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B03, full insert sequence.
FL= gb:AK111922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3895011/11Casein kinase I, delta isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38930OsAffx.14826.2.S1_at1/111+22196795..22198314hypothetical protein
LOC_Os01g38940OsAffx.2189.1.S1_at11/111+22202972..22203438hypothetical protein
LOC_Os01g38950Os.12864.1.S1_a_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38950Os.12864.4.S1_x_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38960OsAffx.11382.1.S1_at11/111+22213746..22214687expressed protein
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004680molecular_functioncasein kinase activity
GO:0004681molecular_functioncasein kinase I activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12864.4.S1_x_at--853--7031Chr01:22207426..22207450 (25 bp)
GTACACTCAAAGTCTTTCTTGCATC
LOC_Os01g38950
Os.12864.4.S1_x_at--889--5591Chr01:22207465..22207489 (25 bp)
GACAATTTTCTCATGGGCCTTGGAA
LOC_Os01g38950
Os.12864.4.S1_x_at--830--5511Chr01:22207629..22207653 (25 bp)
GAAATACCGGGACACTTCAACACAC
LOC_Os01g38950
Os.12864.4.S1_x_at--297--2171Chr01:22207650..22207670 (21 bp)
ACACCAGCACATTCCATACAGAGAG
LOC_Os01g38950
Os.12864.4.S1_x_at--720--5731Chr01:22207958..22207982 (25 bp)
GACTGGGACAGCTCGATATGCTAGT
LOC_Os01g38950
Os.12864.4.S1_x_at--210--2891Chr01:22208147..22208171 (25 bp)
AAGGGATGACCTTGAATCTCTTGGA
LOC_Os01g38950
Os.12864.4.S1_x_at--764--8771Chr01:22210524..22210548 (25 bp)
TGTTTGCTCCTATTGTGCTCTTAGA
LOC_Os01g38950
Os.12864.4.S1_x_at--1062--7311Chr01:22210538..22210562 (25 bp)
GTGCTCTTAGATGCTGTGTGTTAGT
LOC_Os01g38950
Os.12864.4.S1_x_at--1137--7071Chr01:22210596..22210620 (25 bp)
GTCAAGATATTTGCCCTCTGGGTCA
LOC_Os01g38950
Os.12864.4.S1_x_at--1049--9671Chr01:22210618..22210642 (25 bp)
TCACGCGTCGTGTGTGCATTTCGAT
LOC_Os01g38950
Os.12864.4.S1_x_at--772--4951Chr01:22210633..22210657 (25 bp)
GCATTTCGATGCAATTGCTGTCTGA
LOC_Os01g38950
Target Sequence 
GTACACTCAAAGTCTTTCTTGCATCGAGATATTAAGCCAGACAATTTTCTCATGGGCCTTGGAAAGAGGGCAAACCAGGT
ATACATGATTGATTTTGGACTGGCAAAGAAATACCGGGACACTTCAACACACCAGCACATTCCATACAGAGAGAACAAAA
ATTTGACTGGGACAGCTCGATATGCTAGTGTAAACACCCATCTTGGAATCGAACAAAGCAGAAGGGATGACCTTGAATCT
CTTGGATATGTACTCATGTACTTCTTAAGAGGAAGTCTTCCATGGCAGGGTCTAAAAGCTGGGACCAAAAAACAGAAGTA
CGAAACGTTTTAAGCCCCCTGTACATGCTCTTGTTTGCTCCTATTGTGCTCTTAGATGCTGTGTGTTAGTCTTTTTTTAG
ATGTCATATCCTGTATCAAGGTTGTCAAGATATTTGCCCTCTGGGTCACGCGTCGTGTGTGCATTTCGATGCAATTGCTG
TCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12864.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis