Browse Element(s) Details


Os.5356.1.S1_at

Description gb:AK099914.1
DB_XREF= gi:32985123
TID=Os.5356.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116E17, full insert sequence.
FL= gb:AK099914.1 gb:AK072379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3898011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38940OsAffx.2189.1.S1_at11/111+22202972..22203438hypothetical protein
LOC_Os01g38950Os.12864.1.S1_a_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38950Os.12864.4.S1_x_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38960OsAffx.11382.1.S1_at11/111+22213746..22214687expressed protein
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5356.1.S1_at--563--9351Chr01:22227485..22227509 (25 bp)
TCGCATTGGCTGTGTCCGGGACTAC
LOC_Os01g38980
Os.5356.1.S1_at--160--7631Chr01:22227468..22227492 (25 bp)
GGGACTACCCGGCTGATCTACAGAG
LOC_Os01g38980
Os.5356.1.S1_at--695--8911Chr01:22227434..22227458 (25 bp)
TGAGCATGTCAATCTTTCACCAAGA
LOC_Os01g38980
Os.5356.1.S1_at--1096--9471Chr01:22227400..22227424 (25 bp)
TCTCCTACTACAAACAGGCTGCCGA
LOC_Os01g38980
Os.5356.1.S1_at--937--1271Chr01:22227351..22227375 (25 bp)
AGATCAGGCTGTCACCTAGGCTGCA
LOC_Os01g38980
Os.5356.1.S1_at--499--10091Chr01:22227335..22227359 (25 bp)
TAGGCTGCACTACATGGGTCTCCCG
LOC_Os01g38980
Os.5356.1.S1_at--1063--851Chr01:22227174..22227198 (25 bp)
ATGGCATTGTTCATGCAGCGGTCTC
LOC_Os01g38980
Os.5356.1.S1_at--1059--9031Chr01:22227161..22227185 (25 bp)
TGCAGCGGTCTCATGATATCAATAC
LOC_Os01g38980
Os.5356.1.S1_at--424--6031Chr01:22227081..22227105 (25 bp)
GAGATGACACCATTTTTGTCGTTTG
LOC_Os01g38980
Os.5356.1.S1_at--89--6871Chr01:22227052..22227076 (25 bp)
GTTTGTTCATAAGTGTGCTGCCATT
LOC_Os01g38980
Os.5356.1.S1_at--695--7311Chr01:22227038..22227062 (25 bp)
GTGCTGCCATTCTTTAGTATGTTCA
LOC_Os01g38980
Target Sequence 
TCGCATTGGCTGTGTCCGGGACTACCCGGCTGATCTACAGAGCATGGCTCTTGAGCATGTCAATCTTTCACCAAGAGTGG
TGCCCTCTCCTACTACAAACAGGCTGCCGATACCGTCTCCTCGGCCAAGCCCGAAGATCAGGCTGTCACCTAGGCTGCAC
TACATGGGTCTCCCGACGCCTACCGGTTGCAAGCTCCCGATCCCGAGCCCGGAGATCAGGAGGTCACCAAGGGATCAGTT
CATGGGGTTTCAGACACCGTCAGTGTCTCTCACACTCCCAAAGCTTGGGAAGTGAATCAAGTGATCATGCCATGGCATTG
TTCATGCAGCGGTCTCATGATATCAATACTGCTGTTATGGAAGCTATAACAGCAAAANTTTTTAGTTAGTTGTAGCTTAG
ATCAGAGATGACACCATTTTTGTCGTTTGTTTTGTTTGTTCATAAGTGTGCTGCCATTCTTTAGTATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis