Browse Element(s) Details


Os.47961.2.S1_x_at

Description gb:AK121334.1
DB_XREF= gi:37990957
TID=Os.47961.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47961 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119K09, full insert sequence.
FL= gb:AK121334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3899011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47961.2.S1_x_at--65--1891Chr01:22247779..22247803 (25 bp)
ACGATGCCTTCCGTATAAGAGGGAC
LOC_Os01g38990
Os.47961.2.S1_x_at--651--8131Chr01:22247800..22247824 (25 bp)
GGACATTTCAGGGTCTAGCACTCAT
LOC_Os01g38990
Os.47961.2.S1_x_at--948--8551Chr01:22247841..22247865 (25 bp)
TGGAGGCAACTCTTCGCTGGCCTAA
LOC_Os01g38990
Os.47961.2.S1_x_at--740--4711Chr01:22247856..22247880 (25 bp)
GCTGGCCTAAGCCTTAACTATGTGA
LOC_Os01g38990
Os.47961.2.S1_x_at--968--4171Chr01:22248071..22248095 (25 bp)
CCCTTCGGTTGCTATTGGTTTCACA
LOC_Os01g38990
Os.47961.2.S1_x_at--806--1471Chr01:22248112..22248136 (25 bp)
AGAATTTGCTGAGAGTGCCACCCCG
LOC_Os01g38990
Os.47961.2.S1_x_at--899--1131Chr01:22248125..22248149 (25 bp)
AGTGCCACCCCGAGAGAGACTTTAT
LOC_Os01g38990
Os.47961.2.S1_x_at--742--5691Chr01:22248142..22248166 (25 bp)
GACTTTATCAATCGTCTGGTAACGC
LOC_Os01g38990
Os.47961.2.S1_x_at--915--1931Chr01:22248172..22248196 (25 bp)
ACGGCACTGGCCTAATTGTATCAGG
LOC_Os01g38990
Os.47961.2.S1_x_at--91--7731Chr01:22248224..22248248 (25 bp)
GGTGGCGTTGTATTTTCAATCATAA
LOC_Os01g38990
Os.47961.2.S1_x_at--437--6871Chr01:22248352..22248376 (25 bp)
GTATTGAATGTGCTACCTGTATTAT
LOC_Os01g38990
Target Sequence 
ACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAACTCTTCGCT
GGCCTAAGCCTTAACTATGTGAAGNTCGTCCCTTCGGTTGCTATTGGTTTCACAACATATGACATGATGAAGAATTTGCT
GAGAGTGCCACCCCGAGAGAGACTTTATCAATCGTCTGGTAACGCATGANACGGCACTGGCCTAATTGTATCAGGACAAA
GTGAATTCAATAAACTCCACCNGGTGGCGTTGTATTTTCAATCATAAATTCTATCGCTATGTTGCATAGGAGGGAGATAA
GTCGTAATTNAACTGTTTGATTTGTAAATAATGATAGTCATTTGAGTTACTGTAGACTTGGATAAGCTTGTGTATTGAAT
GTGCTACCTGTATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47961.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis