Browse Element(s) Details


OsAffx.23570.1.S1_at

Description tigr:9629.m03712
TID=OsAffx.23570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3903011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23570.1.S1_at--1028--3331Chr01:22269123..22269147 (25 bp)
CACGGATGGTGACGCTTCATCCCTT
LOC_Os01g39030
OsAffx.23570.1.S1_at--1129--7991Chr01:22269126..22269150 (25 bp)
GGATGGTGACGCTTCATCCCTTTCC
LOC_Os01g39030
OsAffx.23570.1.S1_at--316--811Chr01:22269128..22269152 (25 bp)
ATGGTGACGCTTCATCCCTTTCCCT
LOC_Os01g39030
OsAffx.23570.1.S1_at--1136--8071Chr01:22269210..22269234 (25 bp)
GGAGCTCTTCGGTCGCGAGGCTCGC
LOC_Os01g39030
OsAffx.23570.1.S1_at--1032--4611Chr01:22269224..22269248 (25 bp)
GCGAGGCTCGCGTGATCTGGAGCAG
LOC_Os01g39030
OsAffx.23570.1.S1_at--372--5791Chr01:22269343..22269367 (25 bp)
GACGACGTAGATGGAAGGAGCTCAA
LOC_Os01g39030
OsAffx.23570.1.S1_at--831--7631Chr01:22269391..22269415 (25 bp)
GGGACGTTTGCGGACACTTCTTTCT
LOC_Os01g39030
OsAffx.23570.1.S1_at--807--8111Chr01:22269392..22269416 (25 bp)
GGACGTTTGCGGACACTTCTTTCTC
LOC_Os01g39030
OsAffx.23570.1.S1_at--422--1891Chr01:22269394..22269418 (25 bp)
ACGTTTGCGGACACTTCTTTCTCTG
LOC_Os01g39030
OsAffx.23570.1.S1_at--346--10271Chr01:22269397..22269421 (25 bp)
TTTGCGGACACTTCTTTCTCTGCAG
LOC_Os01g39030
OsAffx.23570.1.S1_at--461--1451Chr01:22269491..22269515 (25 bp)
AGAAGCTGGCTGTGACGGTGACGAC
LOC_Os01g39030
Target Sequence 
CACGGATGGTGACGCTTCATCCCTTTCCCTCCTGGCAATCCCTCCTCCCTCCTCGAGCTCCCTCACCGGCGGGTTACCGT
TGCGCCCGGAGCTCTTCGGTCGCGAGGCTCGCGTGATCTGGAGCAGGTGGTTGGTGGCGGCAATCACCGTCGCGTCCGTA
GGAGGCGGCGGCGGTGGTGGGAGGTCCACGGCGATGGGGCTCAAGGAGGGCAGCGACGGCGACGACGTAGATGGAAGGAG
CTCAAGGGGGCGGAGGCGGCGGCTGCTGGGGACGTTTGCGGACACTTCTTTCTCTGCAGGAGGGAGAGAAGAGGCGGGTG
GGGGAGGGGGAGATGAGATCTACGTGAAGAAGCCGGCAGCGGCGGTGAAGAAGCTGGCTGTGACGGTGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis