Browse Element(s) Details


Os.8526.1.S1_at

Description gb:AK068093.1
DB_XREF= gi:32978111
TID=Os.8526.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134O11, full insert sequence.
FL= gb:AK068093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3900011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8526.1.S1_at--787--8191Chr01:22249363..22249387 (25 bp)
GGAAGAGATTCAGGCCGTTGTCACA
LOC_Os01g39000
Os.8526.1.S1_at--658--891Chr01:22249352..22249376 (25 bp)
AGGCCGTTGTCACAGCTGTGCAGCA
LOC_Os01g39000
Os.8526.1.S1_at--252--1611Chr01:22249309..22249333 (25 bp)
AGCTGCAGCTGAAACTCCCAATGAG
LOC_Os01g39000
Os.8526.1.S1_at--144--5551Chr01:22249299..22249323 (25 bp)
GAAACTCCCAATGAGGCTGCTGCTG
LOC_Os01g39000
Os.8526.1.S1_at--611--2911Chr01:22249221..22249245 (25 bp)
AAGGATGATCCGTCGAAGCGGCTCG
LOC_Os01g39000
Os.8526.1.S1_at--869--5691Chr01:22249197..22249221 (25 bp)
GACTTCAAGGGCTTCTTTGCCATGA
LOC_Os01g39000
Os.8526.1.S1_at--266--10191Chr01:22249172..22249196 (25 bp)
TATTTGAGAGGTGCTGCAACCCTGG
LOC_Os01g39000
Os.8526.1.S1_at--593--5031Chr01:22249022..22249046 (25 bp)
GCAGTTTGTGTGTTTTCTTCAGAGT
LOC_Os01g39000
Os.8526.1.S1_at--842--3171Chr01:22248996..22249020 (25 bp)
AATTGTCTGCTTTTGGTGTTTTATC
LOC_Os01g39000
Os.8526.1.S1_at--233--8971Chr01:22248932..22248956 (25 bp)
TGAAATTCTTGTTAGCCTTGTGAGC
LOC_Os01g39000
Os.8526.1.S1_at--116--5931Chr01:22248911..22248935 (25 bp)
GAGCTTGATCTTACTTATGTGAATG
LOC_Os01g39000
Target Sequence 
GGAAGAGATTCAGGCCGTTGTCACAGCTGTGCAGCAGCAGCTGCACACAGAAGGAGCTGCAGCTGAAACTCCCAATGAGG
CTGCTGCTGCTGAAACTTCAGCAGAAGGAGAGAAGCCTGAAGAATCAAAGAGAGATGTAGAGAAGGATGATCCGTCGAAG
CGGCTCGACTTCAAGGGCTTCTTTGCCATGATATTTGAGAGGTGCTGCAACCCTGGGAACAAGAAGAAAGATTAAGCTTG
GAAGAAAATGATNTGGATTTTTTTTGTTTTTTTGTTTTTGTGTGTGTGTTCTTGGAGACTGAAGAATGATGTGCATGGGA
TTGTGGGATGGTGTACAGTTTGCAGTTTGTGTGTTTTCTTCAGAGTTAATTGTCTGCTTTTGGTGTTTTATCCTTTTATG
TGTTGATGGATGTATGTCAAAGAGTACTTTGTGAAATTCTTGTTAGCCTTGTGAGCTTGATCTTACTTATGTGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis