Browse Element(s) Details


Os.8974.1.S1_at

Description gb:AK121299.1
DB_XREF= gi:37990922
TID=Os.8974.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110L12, full insert sequence.
FL= gb:AK121299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3901011/11LIN1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8974.1.S1_at--531--9351Chr01:22260426..22260450 (25 bp)
TCGCTCCGGTTCATCATCGAAGACG
LOC_Os01g39010
Os.8974.1.S1_at--623--7971Chr01:22262143..22262167 (25 bp)
GGATCCTGTTGCTAATGAACCCCTG
LOC_Os01g39010
Os.8974.1.S1_at--879--2731Chr01:22262182..22262206 (25 bp)
AAGAACTTATCAGCCCAGTACCATC
LOC_Os01g39010
Os.8974.1.S1_at--919--71Chr01:22262520..22262544 (25 bp)
ATTGCGCGCAGGATTGCCAAGGGCA
LOC_Os01g39010
Os.8974.1.S1_at--860--1831Chr01:22262564..22262588 (25 bp)
ACGAAAAACCCATAGCTCTTCTGCA
LOC_Os01g39010
Os.8974.1.S1_at--557--451Chr01:22262614..22262638 (25 bp)
ATCTAAGAGCTCACAGTTTCTGCAC
LOC_Os01g39010
Os.8974.1.S1_at--464--10071Chr01:22262683..22262707 (25 bp)
TAGTGCCATGTACCGAATTATCTTT
LOC_Os01g39010
Os.8974.1.S1_at--330--5071Chr01:22262772..22262796 (25 bp)
GCAGCTGGCAGGGTTCAACTTCAAA
LOC_Os01g39010
Os.8974.1.S1_at--185--2411Chr01:22262794..22262818 (25 bp)
AAACAGCCGTCTGTGTGCGCTTCTT
LOC_Os01g39010
Os.8974.1.S1_at--291--4451Chr01:22262835..22262859 (25 bp)
GCCTTCTGTCCTTGAATCCATTTCA
LOC_Os01g39010
Os.8974.1.S1_at--527--3071Chr01:22262895..22262919 (25 bp)
AATCATGATCTCTCATCTGGACGCC
LOC_Os01g39010
Target Sequence 
TCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTACTTNCAAAAAGAACTTATCA
GCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGC
GCAGGATTGCCAAGGGCAGGCACAGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTT
CGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGT
GCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCA
CAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGCTTCTTGGCTCTCCTAACCACTGCCTTCTGTCCT
TGAATCCATTTCAACCATTCTTTTGCTAGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis