Browse Element(s) Details


OsAffx.2190.1.S1_at

Description tigr:9629.m03713
TID=OsAffx.2190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3904011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39080NANA1+22294831..22295418hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009799biological_processdetermination of symmetry
GO:0009954biological_processproximal/distal pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0045449biological_processregulation of transcription
GO:0048441biological_processpetal development
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2190.1.S1_at--384--2751Chr01:22271742..22271766 (25 bp)
AAGAACAAGCCTAGATGCGCCGCGT
LOC_Os01g39040
OsAffx.2190.1.S1_at--302--4531Chr01:22271724..22271748 (25 bp)
GCCGCGTGCAGGTACCTTTCGAGGA
LOC_Os01g39040
OsAffx.2190.1.S1_at--252--9951Chr01:22271712..22271736 (25 bp)
TACCTTTCGAGGAGTTGTTGGCCGG
LOC_Os01g39040
OsAffx.2190.1.S1_at--427--3371Chr01:22271651..22271675 (25 bp)
CACCGGCGCAGTTCGGGAATGTGCA
LOC_Os01g39040
OsAffx.2190.1.S1_at--975--9691Chr01:22271612..22271636 (25 bp)
TCAACAACGTCCTCCGGATGATGGA
LOC_Os01g39040
OsAffx.2190.1.S1_at--460--10151Chr01:22271548..22271572 (25 bp)
TATCGTCTACGAGGCGGATGCTTGG
LOC_Os01g39040
OsAffx.2190.1.S1_at--669--4631Chr01:22271495..22271519 (25 bp)
GCGTCGTGCGGAGCCTAACGAACGA
LOC_Os01g39040
OsAffx.2190.1.S1_at--337--4091Chr01:22271422..22271446 (25 bp)
CGACGAGACCTACGACGGCTACAAG
LOC_Os01g39040
OsAffx.2190.1.S1_at--1053--1751Chr01:22271321..22271345 (25 bp)
ACCTCCAAGAGAATACCGGCATCCT
LOC_Os01g39040
OsAffx.2190.1.S1_at--570--7211Chr01:22271259..22271283 (25 bp)
GTCGACCCAATCAAAGACGTCTTCG
LOC_Os01g39040
OsAffx.2190.1.S1_at--1095--10611Chr01:22271238..22271262 (25 bp)
TTCGACATCGACAGGTTACTCGCCG
LOC_Os01g39040
Target Sequence 
AAGAACAAGCCTAGATGCGCCGCGTGCAGGTACCTTTCGAGGAGTTGTTGGCCGGAGTGCTTGCTGGCGCCCTACTTCCC
GGCCGGCCAGCCACCGGCGCAGTTCGGGAATGTGCACCGCCTCTTCCGCCTCAACAACGTCCTCCGGATGATGGAGGAAA
CCAGGCGGGAGGAGAGGGACGATCTCATGGCGGCTATCGTCTACGAGGCGGATGCTTGGGCCAGGGACCCCCGGTACGGC
GTCGCCGGCGTCGTGCGGAGCCTAACGAACGAGCTCGCCCGCGTCCGCCTCGACGAAATCGCCTTCCACCTCCTCGGCAC
CGACGAGACCTACGACGGCTACAAGGAGGAGGACGCGCTCGCCGTCGACCCCGTGAGCGGCGCCCAAGCGGGCATCGGGG
TGCTCGGTGGCTCGGGCGCGGACCTCCAAGAGAATACCGGCATCCTCCTCGGCGCCGACGAGCCAGGCCCAGGCGAGCTC
GCCGTCGACCCAATCAAAGACGTCTTCGACATCGACAGGTTACTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis