Browse Element(s) Details


Os.51916.1.S1_at

Description gb:AK064271.1
DB_XREF= gi:32974289
TID=Os.51916.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E08, full insert sequence.
FL= gb:AK064271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3902011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein
LOC_Os01g39010Os.8974.1.S1_at11/111+22260113..22262919LIN1 protein, putative, expressed
LOC_Os01g39020Os.51916.1.S1_at11/111+22265712..22268644HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g39030OsAffx.23570.1.S1_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39030OsAffx.23570.1.S1_x_at11/111+22269091..22269555hypothetical protein
LOC_Os01g39040OsAffx.2190.1.S1_at11/111+22271203..22272273hypothetical protein
LOC_Os01g39050NANA1+22276787..22283338retrotransposon protein, putative, unclassified
LOC_Os01g39060Os.17577.4.A1_x_at2/111+22286787..22289844expressed protein
LOC_Os01g39070OsAffx.23571.1.S1_at11/111+22292517..22292894LOB domain protein 22, putative
LOC_Os01g39070OsAffx.23571.1.S1_x_at11/111+22292517..22292894LOB domain protein 22, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009408biological_processresponse to heat
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51916.1.S1_at--192--8171Chr01:22268066..22268090 (25 bp)
GGAAGCTGATGTTTCTCCAGGGAGC
LOC_Os01g39020
Os.51916.1.S1_at--481--9231Chr01:22268081..22268105 (25 bp)
TCCAGGGAGCACTGGCTGTGGCACA
LOC_Os01g39020
Os.51916.1.S1_at--338--3331Chr01:22268123..22268147 (25 bp)
CACTCCAATGTGCAATTTCCAGAAT
LOC_Os01g39020
Os.51916.1.S1_at--1155--3891Chr01:22268181..22268205 (25 bp)
CTGGACGCCTTACCTGAAACTGGAA
LOC_Os01g39020
Os.51916.1.S1_at--750--2431Chr01:22268218..22268242 (25 bp)
AAAAGGCTGGGATTGGCTCCTTCGA
LOC_Os01g39020
Os.51916.1.S1_at--1096--10771Chr01:22268278..22268302 (25 bp)
TTGATGACTGCCCATACCTTGTGGA
LOC_Os01g39020
Os.51916.1.S1_at--388--311Chr01:22268291..22268315 (25 bp)
ATACCTTGTGGAGCCGATGCAGTTC
LOC_Os01g39020
Os.51916.1.S1_at--573--8151Chr01:22268466..22268490 (25 bp)
GGAAACGAACACTCTCAGGTAATGC
LOC_Os01g39020
Os.51916.1.S1_at--776--6771Chr01:22268520..22268544 (25 bp)
GTTACTGTAAATTCTGCTGGGCGCA
LOC_Os01g39020
Os.51916.1.S1_at--850--3091Chr01:22268572..22268596 (25 bp)
AATACTGTCTCTGCAATGTAGCCGA
LOC_Os01g39020
Os.51916.1.S1_at--87--9931Chr01:22268604..22268628 (25 bp)
TACGAATGCCAGTCTTATCAATGTG
LOC_Os01g39020
Target Sequence 
GGAAGCTGATGTTTCTCCAGGGAGCACTGGCTGTGGCACAGTTGGGAAAGTGGAGACCACTCCAATGTGCAATTTCCAGA
ATATTGAGAATATGTGTGATGATGTCTGGGAAGAGCTGGACGCCTTACCTGAAACTGGAATGGAGCAGGAAGAAAAGGCT
GGGATTGGCTCCTTCGATGTCGAGGAGTTCGTCGGAAGGCCTTGTGGTTGGGTTGATGACTGCCCATACCTTGTGGAGCC
GATGCAGTTCGTGGAACACTAGAGGCATGAGAAGAATACAATCTGTCCTTAGAATAGTGGAACGTGTTTATAACGTCTGA
ATATCTGTATATCAATTACCCACTTCGATAGAAGTCTGTACTATGAATAGCATAAGCTCCTGGAACAGAGCTTAAATATA
GGAAACGAACACTCTCAGGTAATGCAAGCCAGGAGTTTGTAGGATTGAAGATTTGTTACTGTAAATTCTGCTGGGCGCAG
CAAAAAAATCGTGATGTTAGATATACAATACTGTCTCTGCAATGTAGCCGAGGAAAAATACGAATGCCAGTCTTATCAAT
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis