Browse Element(s) Details


Os.48825.1.S1_at

Description gb:AK061023.1
DB_XREF= gi:32971041
TID=Os.48825.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D04, full insert sequence.
FL= gb:AK061023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3897010/11Carbamoyl-phosphate synthase large chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38930OsAffx.14826.2.S1_at1/111+22196795..22198314hypothetical protein
LOC_Os01g38940OsAffx.2189.1.S1_at11/111+22202972..22203438hypothetical protein
LOC_Os01g38950Os.12864.1.S1_a_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38950Os.12864.4.S1_x_at11/111+22205837..22210876Casein kinase I, delta isoform, putative, expressed
LOC_Os01g38960OsAffx.11382.1.S1_at11/111+22213746..22214687expressed protein
LOC_Os01g38970Os.48825.1.S1_at10/111+22219635..22224767Carbamoyl-phosphate synthase large chain, putative, expressed
LOC_Os01g38980Os.5356.1.S1_at11/111+22226897..22229950calmodulin-binding family protein, putative, expressed
LOC_Os01g38990Os.47961.2.S1_x_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g38990Os.47961.1.S1_at11/111+22244856..22248422Mitochondrial carrier protein, expressed
LOC_Os01g39000Os.8526.1.S1_at11/111+22248876..22254793expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004086molecular_functioncarbamoyl-phosphate synthase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48825.1.S1_at--552--9631Chr01:22224227..22224251 (25 bp)
TCAGGTGATGCTCTTGACTCCAAAG
LOC_Os01g38970
Os.48825.1.S1_at--911--8391Chr01:22224280..22224304 (25 bp)
GGCCTACAAGGTCCCGATAATTACT
LOC_Os01g38970
Os.48825.1.S1_at--307--6551Chr01:22224383..22224407 (25 bp)
GATTACTTCCAGACTACAGATGCAT
LOC_Os01g38970
Os.48825.1.S1_at--832--6331Chr01:22224401..22224425 (25 bp)
GATGCATCCCAGAACTTGCAAGCAG
LOC_Os01g38970
Os.48825.1.S1_at--231--1651Chr01:22224424..22224448 (25 bp)
AGCGCAAAGTGCCTCTTAGGGTCAT
LOC_Os01g38970
Os.48825.1.S1_at--123--10091Chr01:22224440..22224464 (25 bp)
TAGGGTCATGCCCTTCTATTGTCAT
LOC_Os01g38970
Os.48825.1.S1_at--299--171Chr01:22224512..22224536 (25 bp)
ATTTTGTTTACCTTCTGCATGCGCA
LOC_Os01g38970
Os.48825.1.S1_at--347--10071Chr01:22224563..22224587 (25 bp)
TAGTCTCAAACCTTGTCTTGCGCAT
LOC_Os01g38970
Os.48825.1.S1_at--83--10131Chr01:22224649..22224673 (25 bp)
TATGAAACCATTCCTCTCTGGAGCG
LOC_Os01g38970
Os.48825.1.S1_at--594--10811Chr01:22224675..22224699 (25 bp)
TTGTACTTGTATCCCTGTGGCACAA
LOC_Os01g38970
Os.48825.1.S1_at--1022--5171Chr01:22224792..22224883 (25 bp)
GCAAGTTGTTTGTTAGTGGTCTCTA
NONE
Target Sequence 
TCAGGTGATGCTCTTGACTCCAAAGATGGCCTCCAGCTCCGCAGATTGGCCCTGGCCTACAAGGTCCCGATAATTACTAC
CGTGGATGGGGCGCGTGCTACCATCGATGCTATCAAAAGCTTGAAGAACAAATCAATTGAGACTCTCGCNTTGCAAGATT
ACTTCCAGACTACAGATGCATCCCAGAACTTGCAAGCAGCGCAAAGTGCCTCTTAGGGTCATGCCCTTCTATTGTCATTT
TTCTAATGCTATTGTAGTATCAACTATAGACTTCTGTTCTGTAGGATTTTGTTTACCTTCTGCATGCGCAAGCATAAACA
TGTTGACTGCAAGTACTAGTCTCAAACCTTGTCTTGCGCATTATTATTTACTGTGTAACAGTGGGGGTCAACATCCACAG
AATAAGGCCCCCANTTGCATCTTATGAAACCATTCCTCTCTGGAGCGCTTGTACTTGTATCCCTGTGGCACAAATTTGTG
CTGACTTATTATATNGTATGCTACTCCANATTCTATGATAATGATTTANCTGGNNTCCTCTATCCCTAAGGATAATGAGT
ACCATGCAAGTTGTTTGTTAGTGGTCTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis