Browse Element(s) Details


Os.12950.1.S1_at

Description gb:AK108624.1
DB_XREF= gi:32993833
TID=Os.12950.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D11, full insert sequence.
FL= gb:AK108624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2918010/11LOC496049 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29150Os.27964.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29150OsAffx.25272.1.S1_at11/113+16506119..16516180NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29170Os.26754.1.S1_at11/113+16526730..16532581NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29180Os.12950.1.S1_at10/113+16534924..16540918LOC496049 protein, putative, expressed
LOC_Os03g29190Os.6125.1.S1_at11/113+16544957..16550702PDI, putative, expressed
LOC_Os03g29194NANA3+16554364..16556631hypothetical protein
LOC_Os03g29200OsAffx.30389.1.S1_x_at4/113+16558208..16558882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29206OsAffx.10633.1.S1_at7/113+16560431..16561503retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29212NANA3+16561969..16565106retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12950.1.S1_at--336--4651Chr03:16539558..16539582 (25 bp)
GCGTACTGTGCTTGGTGGTATCTAC
LOC_Os03g29180
Os.12950.1.S1_at--423--8591Chr03:16539573..16539597 (25 bp)
TGGTATCTACTCTACCTCAGAGGTG
LOC_Os03g29180
Os.12950.1.S1_at--701--3151NONE
AATTCTCCAGATTTCCGCGATACAT
NONE
Os.12950.1.S1_at--1123--831Chr03:16540322..16540346 (25 bp)
ATGGACATTTGTGAGCCGCCGTATC
LOC_Os03g29180
Os.12950.1.S1_at--960--2371Chr03:16540369..16540491 (25 bp)
AAACTTTTCAGGAGGCCGCGTATCT
LOC_Os03g29180
Os.12950.1.S1_at--164--6911Chr03:16540486..16540510 (25 bp)
GTATCTAGCAGAAGCCGTCGGTGCA
LOC_Os03g29180
Os.12950.1.S1_at--192--3471Chr03:16540529..16540553 (25 bp)
CAGGGTGTCCTGAACAGACTTTTCA
LOC_Os03g29180
Os.12950.1.S1_at--921--6471Chr03:16540581..16540605 (25 bp)
GATACTTTTCATTCTCGACATTTCC
LOC_Os03g29180
Os.12950.1.S1_at--997--8831Chr03:16540671..16540695 (25 bp)
TGATCACGATTTGCCTACGCTGGTA
LOC_Os03g29180
Os.12950.1.S1_at--942--9631Chr03:16540740..16540764 (25 bp)
TCAGGACCCACATGCGCACAAAGAT
LOC_Os03g29180
Os.12950.1.S1_at--397--9771Chr03:16540849..16540873 (25 bp)
TAATGTCCCACTTCAGGTAGCGTTG
LOC_Os03g29180
Target Sequence 
GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACAT
GGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCC
GTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTG
ATACTTTTCATTCTCGACATTTCCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAA
ACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATGTACATAATAGCATGTTTTTTTACGATGAAATATCGTC
AGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTACTTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAA
CCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis