Browse Element(s) Details


Os.12957.1.S1_x_at

Description gb:AK070807.1
DB_XREF= gi:32980830
TID=Os.12957.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069P08, full insert sequence.
FL= gb:AK070807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g296509/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29610OsAffx.29420.1.S1_at11/118+18032630..18034006hypothetical protein
LOC_Os08g29630OsAffx.28472.1.S1_x_at11/118+18047792..18047992hypothetical protein
LOC_Os08g29630OsAffx.31730.1.S1_x_at2/118+18047792..18047992hypothetical protein
LOC_Os08g29640OsAffx.29421.1.S1_at8/118+18051761..18052636hypothetical protein
LOC_Os08g29650Os.12957.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_x_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650Os.12957.1.S1_x_at9/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29660Os.11945.1.S1_at11/118+18087202..18088908WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12957.1.S1_x_at--1045--211NONE
ATATTGTGGCCGCAGAGGCTCTCAA
NONE
Os.12957.1.S1_x_at--668--1351Chr08:18062375..18062399 (25 bp)
AGAGATCGTCAGAGGGACCGCTCAC
LOC_Os08g29650
Os.12957.1.S1_x_at--1153--7591Chr08:18062506..18062530 (25 bp)
GGGCAGCTCTCCACATGACAGAGAT
LOC_Os08g29650
Os.12957.1.S1_x_at--1152--8031Chr08:18062546..18062570 (25 bp)
GGAGACAGGTCCAGGTCACCGGCTA
LOC_Os08g29650
Os.12957.1.S1_x_at--62--5331Chr08:18062591..18062615 (25 bp)
GACTAGCAAGTTTTCCCTTCGGGTG
LOC_Os08g29650
Os.12957.1.S1_x_at--675--8091Chr08:18062622..18062646 (25 bp)
GGACTGGATTTCTGTTTCCGGGATA
LOC_Os08g29650
Os.12957.1.S1_x_at--574--10111Chr08:18062695..18062719 (25 bp)
TATGGAGTCTCCTAGCAGCTTGGCT
LOC_Os08g29650
Os.12957.1.S1_x_at--679--5571Chr08:18062720..18062744 (25 bp)
GAAATTTGGTTAAGCGCGTTATCCG
LOC_Os08g29650
Os.12957.1.S1_x_at--563--4031Chr08:18062736..18062760 (25 bp)
CGTTATCCGCTTACTTTCTGATGAG
LOC_Os08g29650
Os.12957.1.S1_x_at--110--5631Chr08:18062810..18062834 (25 bp)
GACAAACCGCGAACGATTGAACTTT
LOC_Os08g29650
Os.12957.1.S1_x_at--381--7911Chr08:18062868..18062892 (25 bp)
GGATTGTTTCGTCATTTTGAACTCA
NONE
Target Sequence 
ATATTGTGGCCGCAGAGGCTCTCAAAGAAGTTCCAGGAGCCCATCACCTTACCGGTCTCGCAGAAGGGAGCGATCTCGCT
CAAGAGATCGTCAGAGGGACCGCTCACGCTCCAGGGATCGCCGCAGGGACCGCTCTCGCTCGAGGGATCGCCGCAGGGAC
CGCTCTCGCTCGAGGGATCGCCGCAGGGACCGCTCGCGCTCAAGGGATCGTCGGGGCAGCTCTCCACATGACAGAGATTC
TCACAGGAGGCGTGGAGACAGGTCCAGGTCACCGGCTACCAACGGGAACCACAAAAAGGACTAGCAAGTTTTCCCTTCGG
GTGTTTGTAGGACTGGATTTCTGTTTCCGGGATATTATTGAGTACCGGTGTGAACTTAATGGTTCAGTATCAGACAGCGT
GGTATGGAGTCTCCTAGCAGCTTGGCTGAAATTTGGTTAAGCGCGTTATCCGCTTACTTTCTGATGAGAAGATATTATAT
ATTGTTATAACTTATATGATATTTCAGTGTGTTNCTGGGACAAACCGCGAACGATTGAACTTTGTGGAATTCATATGATT
GGTTGCTTATNCAACTGGATTGTTTCGTCATTTTGAACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12957.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis