Browse Element(s) Details


Os.12959.1.S1_at

Description gb:AA753101
DB_XREF= gi:2800112
DB_XREF=97AS2132
CLONE=97AS2132
TID=Os.12959.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12959 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_188691.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4678011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46750Os.56257.1.S1_at11/115+26984094..26986744Protein kinase domain containing protein, expressed
LOC_Os05g46760Os.6085.1.S1_at11/115+26992676..26994094Protein kinase domain containing protein, expressed
LOC_Os05g46770Os.49992.1.S1_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.49992.1.S1_s_at11/115+27001961..27005810expressed protein
LOC_Os05g46770Os.53970.1.S1_at10/115+27001961..27005810expressed protein
LOC_Os05g46780Os.12959.1.S1_at11/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46780OsAffx.15132.1.S1_at7/115+27010298..27015753transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g46790OsAffx.27346.1.S1_at11/115+27018323..27018883expressed protein
LOC_Os05g46800Os.5308.1.S1_at5/115+27020518..27022416hypothetical protein
LOC_Os05g46810NANA5+27027624..27031523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g46820OsAffx.15131.1.S1_at11/115+27034055..27035050hypothetical protein
LOC_Os05g46830Os.55674.1.S1_at11/115+27035850..27037053expressed protein
LOC_Os05g46840Os.55984.1.S1_at11/115+27038710..27039629expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12959.1.S1_at--24--5611Chr05:27015431..27015455 (25 bp)
GAAATTGCTGGAAACTTTGCTCCAT
LOC_Os05g46780
Os.12959.1.S1_at--1093--5531Chr05:27015441..27015465 (25 bp)
GAAACTTTGCTCCATTGTTACCTGA
LOC_Os05g46780
Os.12959.1.S1_at--984--2031Chr05:27015444..27015468 (25 bp)
ACTTTGCTCCATTGTTACCTGAGAT
LOC_Os05g46780
Os.12959.1.S1_at--659--8771Chr05:27015456..27015480 (25 bp)
TGTTACCTGAGATTTTGACGTCCCT
LOC_Os05g46780
Os.12959.1.S1_at--88--3872Chr05:27015462..27015486 (25 bp)
CTGAGATTTTGACGTCCCTCTGCTG
LOC_Os05g46780
Os.12959.1.S1_at--180--6872Chr05:27044058..27044082 (25 bp)
GTTTGTACTATGGTTTCAGTCGCCT
NONE
Os.12959.1.S1_at--155--7012Chr05:27044062..27044086 (25 bp)
GTACTATGGTTTCAGTCGCCTGAAT
NONE
Os.12959.1.S1_at--825--9711Chr05:27015527..27015551 (25 bp)
TCAAGAATGCCTGAAGGAACATGGC
LOC_Os05g46780
Os.12959.1.S1_at--639--7931Chr05:27015582..27015606 (25 bp)
GGATTCTAGAGCCTAGACTTGTTTT
LOC_Os05g46780
Os.12959.1.S1_at--638--10051Chr05:27015625..27015649 (25 bp)
TAGTACCGCTACTGACTTCATGGTT
LOC_Os05g46780
Os.12959.1.S1_at--263--4851Chr05:27015632..27015656 (25 bp)
GCTACTGACTTCATGGTTTTGTCAA
LOC_Os05g46780
Target Sequence 
GAAATTGCTGGAAACTTTGCTCCATTGTTACCTGAGATTTTGACGTCCCTCTGCTGNCNTGTTGTTTGTACTATGGTTTC
AGTCGCCTGAATNTTTTTCAAGAATGCCTGAAGGAACATGGCAGANGCCGGTAATCTTCCGTTNCATTTATAGGATTCTA
GAGCCTAGACTTGTTTTATNNNCCAGTGGTTGATNTAGTACCGCTACTGACTTCATGGTTTTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis