Browse Element(s) Details


Os.12984.1.S1_at

Description gb:AK071344.1
DB_XREF= gi:32981367
TID=Os.12984.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12984 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091E24, full insert sequence.
FL= gb:AK071344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6925011/11Mitochondrial import receptor subunit TOM20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69260OsAffx.2441.1.S1_at11/111+40579452..40582265hypothetical protein
LOC_Os01g69270NANA1+40583655..40585321MYND finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12984.1.S1_at--905--8871Chr01:40571115..40571139 (25 bp)
TGAGGTGGGTCGTCTTCCAACACTA
LOC_Os01g69250
Os.12984.1.S1_at--662--8751Chr01:40571162..40571186 (25 bp)
TGTTAGGTGCCTCAGACTTCAAATC
LOC_Os01g69250
Os.12984.1.S1_at--645--5691Chr01:40571176..40571200 (25 bp)
GACTTCAAATCTTGCTAGTGGCTAG
LOC_Os01g69250
Os.12984.1.S1_at--377--10511Chr01:40571250..40571274 (25 bp)
TTCAATGCCTGATATCCTTTTCCAG
LOC_Os01g69250
Os.12984.1.S1_at--514--10431Chr01:40571324..40571348 (25 bp)
TTATCCCGGTATTGTTTTGAGGCAA
LOC_Os01g69250
Os.12984.1.S1_at--1160--4391Chr01:40571406..40571430 (25 bp)
GCCACACTGGGTGCTATTGTATGGT
LOC_Os01g69250
Os.12984.1.S1_at--195--5451Chr01:40571431..40571455 (25 bp)
GAACGGCATCCTTTCTTTTATTAAG
LOC_Os01g69250
Os.12984.1.S1_at--551--631Chr01:40571462..40571486 (25 bp)
ATGCTCAGCTGTTGTCTGAATCCCA
LOC_Os01g69250
Os.12984.1.S1_at--1094--391Chr01:40571503..40571527 (25 bp)
ATCAGCACACTGTCTGGTTGTGGTT
LOC_Os01g69250
Os.12984.1.S1_at--662--6731Chr01:40571542..40571566 (25 bp)
GTTTTCCTTGAATCATTACCCCTGA
LOC_Os01g69250
Os.12984.1.S1_at--331--9571Chr01:40571554..40571578 (25 bp)
TCATTACCCCTGATTGTTTTACGCC
LOC_Os01g69250
Target Sequence 
TGAGGTGGGTCGTCTTCCAACACTACCTGCAGAAGGCAGCGTGCCTATGTTAGGTGCCTCAGACTTCAAATCTTGCTAGT
GGCTAGTTAATCATGGAGAGGAACTGGTGTTTCCATGTTACAGTTTGGTCAGATTTTCAATGCCTGATATCCTTTTCCAG
CTTTGATGAGGTTTAGATGAGTCATAAATCAACACTTATTGATACTTGTTTATCCCGGTATTGTTTTGAGGCAAAAACTA
TTATTACTATGTTTTGATCGTTTTATCAATGCTATCTGCATTATNNNNANNNCNGCCACACTGGGTGCTATTGTATGGTG
AACGGCATCCTTTCTTTTATTAAGCACATAATGCTCAGCTGTTGTCTGAATCCCAGAATTGAACCTGTGTAATCAGCACA
CTGTCTGGTTGTGGTTTTGTTGGGAACATCGTTTTCCTTGAATCATTACCCCTGATTGTTTTACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis