Browse Element(s) Details


Os.13051.1.S1_at

Description gb:AB079873.1
DB_XREF= gi:18700482
GEN=OsDMC1A
TID=Os.13051.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13051 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsDMC1A mRNA for DMC1, complete cds.
PROD=DMC1
FL= gb:AB046620.1 gb:AB079873.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0498011/11Meiotic recombination protein DMC1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04940Os.18447.1.S1_at3/1112+2127574..2134180expressed protein
LOC_Os12g04950NANA12+2136931..2138890retrotransposon, putative, centromere-specific
LOC_Os12g04960OsAffx.19499.1.S1_at11/1112+2139895..2142972hypothetical protein
LOC_Os12g04970NANA12+2147803..2149470retrotransposon protein, putative, unclassified
LOC_Os12g04980Os.13051.1.S1_at11/1112+2152131..2157087Meiotic recombination protein DMC1 homolog, putative, expressed
LOC_Os12g04990Os.18732.1.S1_at11/1112+2160590..2169061AMP-binding enzyme family protein, expressed
LOC_Os12g05000OsAffx.31586.1.S1_s_at11/1112+2170700..2173955expressed protein
LOC_Os12g05010OsAffx.16205.1.S1_at2/1112+2175946..2177904hypothetical protein
LOC_Os12g05020OsAffx.31587.1.S1_at10/1112+2178172..2179893Protein GOS9, putative

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006259biological_processDNA metabolism
GO:0006281biological_processDNA repair
GO:0006302biological_processdouble-strand break repair
GO:0007126biological_processmeiosis
GO:0007131biological_processmeiotic recombination
GO:0007140biological_processmale meiosis
GO:0007143biological_processfemale meiosis
GO:0009314biological_processresponse to radiation
GO:0016444biological_processsomatic cell DNA recombination
GO:0000150molecular_functionrecombinase activity
GO:0003684molecular_functiondamaged DNA binding
GO:0003697molecular_functionsingle-stranded DNA binding
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13051.1.S1_at--416--9811Chr12:2153729..2153753 (25 bp)
TAACTGACCTGAAAAAACCAGCGGG
LOC_Os12g04980
Os.13051.1.S1_at--151--4331Chr12:2153240..2153264 (25 bp)
CCATATAGGTTTGGTACATTGACTA
LOC_Os12g04980
Os.13051.1.S1_at--73--3611Chr12:2153224..2153248 (25 bp)
CATTGACTAAACTACTACTGCTACT
LOC_Os12g04980
Os.13051.1.S1_at--77--9911Chr12:2153212..2153236 (25 bp)
TACTACTGCTACTTTGCCACTGTCG
LOC_Os12g04980
Os.13051.1.S1_at--1114--4831Chr12:2153205..2153229 (25 bp)
GCTACTTTGCCACTGTCGAGGAAAT
LOC_Os12g04980
Os.13051.1.S1_at--323--4411Chr12:2153197..2153221 (25 bp)
GCCACTGTCGAGGAAATATGCAACC
LOC_Os12g04980
Os.13051.1.S1_at--126--271Chr12:2153182..2153206 (25 bp)
ATATGCAACCTCATTTATCCAGACG
LOC_Os12g04980
Os.13051.1.S1_at--966--9011Chr12:2153179..2153203 (25 bp)
TGCAACCTCATTTATCCAGACGATT
LOC_Os12g04980
Os.13051.1.S1_at--505--531Chr12:2153166..2153190 (25 bp)
ATCCAGACGATTATACCTTAAAATG
LOC_Os12g04980
Os.13051.1.S1_at--818--791Chr12:2153144..2153168 (25 bp)
ATGGGTATTTTTCTATGCTTATGAG
LOC_Os12g04980
Os.13051.1.S1_at--578--631Chr12:2153130..2153154 (25 bp)
ATGCTTATGAGATCAACAGTTGTAC
LOC_Os12g04980
Target Sequence 
TAACTGACCTGAAAAAACCAGCGGGAGGCCACGTGCTGGCGCATGCAGCTACCATCCGGTTGATGCTGAGGAAAGGCAAA
GGAGAGCAGCGTGTCTGCAAGATCTTTGATGCCCCTAACCTGCCTGAGGGAGAAGCTGTTTTCCAGGTAACATCAGGTGG
AATAATGGATGCGAAAGACTGAATGTTCATTGAGGGTGCTTCCTGTCTTCAAATTATTCAGGTTTCTCCTAGTAAATTCC
TGCATAGGCCATATAGGTTTGGTACATTGACTAAACTACTACTGCTACTTTGCCACTGTCGAGGAAATATGCAACCTCAT
TTATCCAGACGATTATACCTTAAAATGGGTATTTTTCTATGCTTATGAGATCAACAGTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis