Browse Element(s) Details


OsAffx.31586.1.S1_s_at

Description tigr:9640.m00421
TID=OsAffx.31586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0500011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04970NANA12+2147803..2149470retrotransposon protein, putative, unclassified
LOC_Os12g04980Os.13051.1.S1_at11/1112+2152131..2157087Meiotic recombination protein DMC1 homolog, putative, expressed
LOC_Os12g04990Os.18732.1.S1_at11/1112+2160590..2169061AMP-binding enzyme family protein, expressed
LOC_Os12g05000OsAffx.31586.1.S1_s_at11/1112+2170700..2173955expressed protein
LOC_Os12g05010OsAffx.16205.1.S1_at2/1112+2175946..2177904hypothetical protein
LOC_Os12g05020OsAffx.31587.1.S1_at10/1112+2178172..2179893Protein GOS9, putative
LOC_Os12g05030OsAffx.31588.1.S1_at11/1112+2182964..2183687hypothetical protein
LOC_Os12g05040Os.7649.1.S1_at7/1112+2192737..2197849heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31586.1.S1_s_at--613--71Chr12:2172090..2172114 (25 bp)
ATTGCTCTCAATGCTTGGCATCGTA
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--542--3191Chr12:2172098..2172122 (25 bp)
CAATGCTTGGCATCGTATAGATCGC
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--91--6411Chr12:2172159..2172180 (22 bp)
GATCTGCTTGACATATATGAGGACC
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--231--6191Chr12:2173404..2173427 (24 bp)
GAGGACCGAATTAGGGCCTTCATTG
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--275--2991Chr12:2173460..2173484 (25 bp)
AATGTCCAGGATCCGTTTCAGAGGT
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--922--6151Chr12:2173480..2173504 (25 bp)
GAGGTTGCTTCTGCATGGTGTATGT
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--909--911Chr12:2173690..2173714 (25 bp)
AGGCTCACATTAGTTAGCTTTCTGA
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--1146--5451Chr12:2173725..2173749 (25 bp)
GAACGGATCCCAGTAACATGTGGTT
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--744--2111Chr12:2173740..2173764 (25 bp)
ACATGTGGTTGCTTCAGGACCAGAA
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--1134--4891Chr12:2173782..2173806 (25 bp)
GCTTACTGCTGTGCCATGTATTGGC
LOC_Os12g05000
OsAffx.31586.1.S1_s_at--338--8351Chr12:2173810..2173834 (25 bp)
GGCGATCCTAAATCGGCTAAACGTG
LOC_Os12g05000
Target Sequence 
ATTGCTCTCAATGCTTGGCATCGTATAGATCGCCAAACAAGAGAAGCCATAAAGAGAAATTTCCTCCCAGATCTGCTTGA
CATATATGAGGACCGAATTAGGGCCTTCATTGAAGATGCTAGTGGTAAAGATGTGCTTGTACTGAATGTCCAGGATCCGT
TTCAGAGGTTGCTTCTGCATGGTGTATGTGAGTTCTATAACGTATCATCTACAACCACGACTACCATGAGAGATGGAAAG
CTGTGGAAGACGACAACAATTAAGAGGAGACCGGGAACCGGTGCTCCCTCCAGGCTCACATTAGTTAGCTTTCTGAGGAT
GAAGAAGAACGGATCCCAGTAACATGTGGTTGCTTCAGGACCAGAAGCAAGAATTTATCAGATGCTTACTGCTGTGCCAT
GTATTGGCACAGGCGATCCTAAATCGGCTAAACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31586.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis