Browse Element(s) Details


Os.13544.1.S1_x_at

Description gb:AK061456.1
DB_XREF= gi:32971474
TID=Os.13544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H03, full insert sequence.
FL= gb:AK061456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3783211/11GM14633p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37837Os.5952.4.S1_x_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37837Os.5952.2.S1_s_at11/111+21502603..21506769Seryl-tRNA synthetase, putative, expressed
LOC_Os01g37842Os.54221.1.A1_at11/111+21508294..21510864expressed protein
LOC_Os01g37842OsAffx.11367.1.S1_x_at11/111+21508294..21510864expressed protein
LOC_Os01g37850Os.18128.1.S1_a_at11/111+21511789..21514271expressed protein
LOC_Os01g37860NANA1+21515576..21521235retrotransposon protein, putative, unclassified, expressed
LOC_Os01g37870Os.19155.1.S1_at11/111+21522279..21528594pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13544.1.S1_x_at--684--1051Chr01:21498225..21498249 (25 bp)
AGGGTGTGGCTAACCTAACTCTACA
LOC_Os01g37832
Os.13544.1.S1_x_at--401--3731Chr01:21498239..21498263 (25 bp)
CTAACTCTACATTTCCCTGAGAACT
LOC_Os01g37832
Os.13544.1.S1_x_at--872--1391Chr01:21499069..21499093 (25 bp)
AGACTGGAGGTGGTTTCTCGCATGT
LOC_Os01g37832
Os.13544.1.S1_x_at--831--9111Chr01:21499244..21499268 (25 bp)
TGCTGCTATCAGCTGTGATGACCTT
LOC_Os01g37832
Os.13544.1.S1_x_at--651--7391Chr01:21499258..21499282 (25 bp)
GTGATGACCTTCAGCTCTACTAATA
LOC_Os01g37832
Os.13544.1.S1_x_at--598--3031Chr01:21499287..21499311 (25 bp)
AATCCAGCTCTTGGAGACCAGTAGT
LOC_Os01g37832
Os.13544.1.S1_x_at--404--6931Chr01:21499307..21499331 (25 bp)
GTAGTAGCTTGACTTCTGAGTGCAG
LOC_Os01g37832
Os.13544.1.S1_x_at--569--5471Chr01:21499331..21499355 (25 bp)
GAACTCGTGTACCTGTCGATACTGA
LOC_Os01g37832
Os.13544.1.S1_x_at--431--8291Chr01:21499376..21499400 (25 bp)
GGCTTGTGCAATTTTACCGTAGTCT
LOC_Os01g37832
Os.13544.1.S1_x_at--526--10491Chr01:21499400..21499424 (25 bp)
TTAACTGTCTGTACTTCATGTCCAT
LOC_Os01g37832
Os.13544.1.S1_x_at--172--9631Chr01:21499415..21499439 (25 bp)
TCATGTCCATATTGCGTTCAGTTCA
LOC_Os01g37832
Target Sequence 
AGGGTGTGGCTAACCTAACTCTACATTTCCCTGAGAACTTTGGAGGTGACACAACTAAGATATATTACATTGGGTTGCGT
GGTGAAGCTACTCAGAACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCATCTGATCACAAAAC
TAAGTCTGAGACTGGAGGTGGTTTCTCGCATGTTGAGTAGGCATGTCAGAGCATGGAAAGCAGATCGGTGTTGGATGCTG
CTATCAGCTGTGATGACCTTCAGCTCTACTAATAAAACAATCCAGCTCTTGGAGACCAGTAGTAGCTTGACTTCTGAGTG
CAGAACTCGTGTACCTGTCGATACTGACTACATCGTCAAAAGTTGATGGCTTGTGCAATTTTACCGTAGTCTTAACTGTC
TGTACTTCATGTCCATATTGCGTTCAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13544.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis