Browse Element(s) Details


Os.13708.1.S1_at

Description gb:AK066916.1
DB_XREF= gi:32976934
TID=Os.13708.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089E02, full insert sequence.
FL= gb:AK105056.1 gb:AK105050.1 gb:AK066916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1425011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14230OsAffx.3238.1.S1_at10/113+7699683..7700771hypothetical protein
LOC_Os03g14230Os.17546.1.S1_a_at1/113+7699683..7700771hypothetical protein
LOC_Os03g14240OsAffx.12855.1.S1_at11/113+7716407..7717328NA
LOC_Os03g14250Os.13708.1.S1_at11/113+7720007..7728422expressed protein
LOC_Os03g14260Os.10527.1.S1_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S2_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.10527.1.S3_a_at11/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14260Os.14713.1.S1_at1/113+7733755..7742718Sec7 domain containing protein, expressed
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13708.1.S1_at--1070--411Chr03:7727911..7727935 (25 bp)
ATCATCTTCCTCAATTTCTAACCAA
LOC_Os03g14250
Os.13708.1.S1_at--193--10531Chr03:7727960..7727984 (25 bp)
TTCAGTCGGTTCTTCGCCAAGGAAA
LOC_Os03g14250
Os.13708.1.S1_at--648--10731Chr03:7728003..7728027 (25 bp)
TTGCAAGATGCTAGCGTTGGCCTGC
LOC_Os03g14250
Os.13708.1.S1_at--37--8471Chr03:7728020..7728044 (25 bp)
TGGCCTGCTGATTCTTTACTGTGAA
LOC_Os03g14250
Os.13708.1.S1_at--966--6311Chr03:7728054..7728078 (25 bp)
GATGCAAGCCACGAGTTTTCTGTAG
LOC_Os03g14250
Os.13708.1.S1_at--590--8671Chr03:7728086..7728110 (25 bp)
TGTGTATTCTTCGAGGTGACGCCTT
LOC_Os03g14250
Os.13708.1.S1_at--1081--7371Chr03:7728101..7728125 (25 bp)
GTGACGCCTTCAGTTGCTGGAATAA
LOC_Os03g14250
Os.13708.1.S1_at--958--4691Chr03:7728116..7728140 (25 bp)
GCTGGAATAATTCTTCTTCGCTCGA
LOC_Os03g14250
Os.13708.1.S1_at--938--8731Chr03:7728170..7728194 (25 bp)
TGAGAATGTTTAGCCATCCGTACCT
LOC_Os03g14250
Os.13708.1.S1_at--350--6691Chr03:7728217..7728241 (25 bp)
GTTGCCGTGTGTTTGAAACCTCACT
LOC_Os03g14250
Os.13708.1.S1_at--1097--5991Chr03:7728242..7728266 (25 bp)
GAGACCTCACTGTACATGTGCTTAC
LOC_Os03g14250
Target Sequence 
ATCATCTTCCTCAATTTCTAACCAATTGCCCGAGAAACAAAACCGGGGTTTCAGTCGGTTCTTCGCCAAGGAAAAGATCT
AAAAAAAGCTGCTTGCAAGATGCTAGCGTTGGCCTGCTGATTCTTTACTGTGAATGACGGGATGATGCAAGCCACGAGTT
TTCTGTAGAGCTACTTGTGTATTCTTCGAGGTGACGCCTTCAGTTGCTGGAATAATTCTTCTTCGCTCGAAGTCGAGCGG
TTAAGGCCAGATTTATTTGTGAGAATGTTTAGCCATCCGTACCTCCGTCCCGCTAGAGTGTTCTGGGTTGCCGTGTGTTT
GAAACCTCACTGAGACCTCACTGTACATGTGCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis