Browse Element(s) Details


Os.13772.1.S1_at

Description gb:AK063093.1
DB_XREF= gi:32973111
TID=Os.13772.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-B04, full insert sequence.
FL= gb:AK063093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g492209/11Tim10/DDP family zinc finger containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49210Os.7095.1.S1_at3/114+29120377..29122074oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49220OsAffx.10905.1.S1_at11/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49220Os.13772.1.S1_at9/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49230OsAffx.26536.1.S1_at11/114+29147940..29148821B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13772.1.S1_at--175--9671Chr10:10367287..10367311 (25 bp)
TCAGCCGTGCTTTGTTCAGTTCGCA
NONE
Os.13772.1.S1_at--624--1231NONE
AGTTCGCAGCGCTAGGAAGCATTCA
NONE
Os.13772.1.S1_at--467--4951Chr04:29132186..29132210 (25 bp)
GCATTCAGGAATTTGATGGCTCTCA
LOC_Os04g49220
Os.13772.1.S1_at--732--5433Chr10:10367235..10367263 (25 bp)
GAACCTATCAGAATATGGCATCCAT
NONE
Os.13772.1.S1_at--386--8491Chr04:29132122..29132146 (25 bp)
TGGCATCCATCTTTTATTTTTTCTG
LOC_Os04g49220
Os.13772.1.S1_at--479--10371Chr04:29132106..29132130 (25 bp)
TTTTTTCTGCCATTTGTCTTCTAAG
LOC_Os04g49220
Os.13772.1.S1_at--857--2851Chr04:29132080..29132104 (25 bp)
AAGTGCTATGCTTTTCTGCATACTA
LOC_Os04g49220
Os.13772.1.S1_at--759--4371Chr04:29131950..29131974 (25 bp)
CCAATGGATTTGTGTGCAGGCTATC
LOC_Os04g49220
Os.13772.1.S1_at--674--9191Chr04:29131922..29131946 (25 bp)
TGCCATCGCGGTTTGCAGCACTAAG
LOC_Os04g49220
Os.13772.1.S1_at--600--6851Chr04:29131912..29131936 (25 bp)
GTTTGCAGCACTAAGTTCCCTGTAG
LOC_Os04g49220
Os.13772.1.S1_at--276--6711Chr04:29131898..29131922 (25 bp)
GTTCCCTGTAGACCTTGCTTGAAAT
LOC_Os04g49220
Target Sequence 
TCAGCCGTGCTTTGTTCAGTTCGCAGCGCTAGGAAGCATTCAGGAATTTGATGGCTCTCAATGGTTNCTTAGGATGATGA
AAGTGAACCTATCAGAATATGGCATCCATCTTTTATTTTTTCTGCCATTTGTCTTCTAAGNAAAGTGCTATGCTTTTCTG
CATACTAATTTAGAAAAGGCACATGGTGATAAACCATAAATGTGCAATATTTTTGTATTTAAGTTCATGNAATTGTTCAT
GGNCTCTTTTCATCCTTTGATGGAGAAATGNNCCAATGGATTTGTGTGCAGGCTATCATNTGCCATCGCGGTTTGCAGCA
CTAAGTTCCCTGTAGACCTTGCTTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis