Browse Element(s) Details


OsAffx.4126.1.S1_at

Description tigr:9632.m04771
TID=OsAffx.4126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4917011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49150Os.2352.1.S1_a_at11/114+29089153..29095022Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os04g49160Os.27330.1.A1_at11/114+29098117..29099361Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49210Os.7095.1.S1_at3/114+29120377..29122074oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49220OsAffx.10905.1.S1_at11/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49220Os.13772.1.S1_at9/114+29129690..29135033Tim10/DDP family zinc finger containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4126.1.S1_at--127--6431Chr04:29105370..29105394 (25 bp)
GATCATAGTAGCTACGACCTCGCGT
LOC_Os04g49170
OsAffx.4126.1.S1_at--932--5831Chr04:29105355..29105379 (25 bp)
GACCTCGCGTTAACGTTGCGGCGGA
LOC_Os04g49170
OsAffx.4126.1.S1_at--458--2591Chr04:29105344..29105368 (25 bp)
AACGTTGCGGCGGAAGCTCCTGCTC
LOC_Os04g49170
OsAffx.4126.1.S1_at--388--9191Chr04:29105253..29105277 (25 bp)
TGCCAGGAGGACAATGAGCTCCCCG
LOC_Os04g49170
OsAffx.4126.1.S1_at--85--9211Chr04:29105226..29105250 (25 bp)
TGCCACTCCTGGTGCGACAGCGACG
LOC_Os04g49170
OsAffx.4126.1.S1_at--266--5651Chr04:29105211..29105235 (25 bp)
GACAGCGACGTCGTAGACACCGGCG
LOC_Os04g49170
OsAffx.4126.1.S1_at--50--851Chr04:29105184..29105208 (25 bp)
ATGGAGCGCCTCATGCAGGCGAAGC
LOC_Os04g49170
OsAffx.4126.1.S1_at--4--911Chr04:29105168..29105192 (25 bp)
AGGCGAAGCTCAGTACGTCGTGGTA
LOC_Os04g49170
OsAffx.4126.1.S1_at--1030--8351Chr04:29105118..29105142 (25 bp)
GGCGGATCAGACAACATGGCCTCGC
LOC_Os04g49170
OsAffx.4126.1.S1_at--861--5631Chr04:29105085..29105109 (25 bp)
GACACGAGCGCGGACATCTGCACGA
LOC_Os04g49170
OsAffx.4126.1.S1_at--741--471Chr04:29105070..29105094 (25 bp)
ATCTGCACGATTTGCTTGGCGGAAC
LOC_Os04g49170
Target Sequence 
GATCATAGTAGCTACGACCTCGCGTTAACGTTGCGGCGGAAGCTCCTGCTCCTCGACATCCTCGCCGTCCTCCGCTTCCT
CGCGGCGGCCCTCCTCGAGCGTCTCGGCGTCGTGTCCTGCCAGGAGGACAATGAGCTCCCCGGCTGCCACTCCTGGTGCG
ACAGCGACGTCGTAGACACCGGCGCGATGGAGCGCCTCATGCAGGCGAAGCTCAGTACGTCGTGGTACAGGCTACGGCGG
CGTGCTTCGCGGGGCGGATCAGACAACATGGCCTCGCCGCACGGCGACACGAGCGCGGACATCTGCACGATTTGCTTGGC
GGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis