Browse Element(s) Details


Os.7095.1.S1_at

Description gb:AK100853.1
DB_XREF= gi:32986062
TID=Os.7095.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023123J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123J08, full insert sequence.
FL= gb:AK100853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g492103/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49160Os.27330.1.A1_at11/114+29098117..29099361Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49210Os.7095.1.S1_at3/114+29120377..29122074oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49220OsAffx.10905.1.S1_at11/114+29129690..29135033Tim10/DDP family zinc finger containing protein
LOC_Os04g49220Os.13772.1.S1_at9/114+29129690..29135033Tim10/DDP family zinc finger containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7095.1.S1_at--350--10831Chr04:29120532..29120556 (25 bp)
TTGTGATCCATAAACAGGCCATGCA
LOC_Os04g49210
Os.7095.1.S1_at--47--2111Chr04:29120495..29120519 (25 bp)
ACATCCGATGCGACGTGTTATACCA
LOC_Os04g49210
Os.7095.1.S1_at--492--8071Chr04:29120418..29120442 (25 bp)
GGAGCACTACCAATCTAGATCTATG
LOC_Os04g49210
Os.7095.1.S1_at--681--231Chr04:29120201..29120225 (25 bp)
ATATACATAGCATCCAGGCACTTCC
NONE
Os.7095.1.S1_at--587--931Chr04:29120186..29120210 (25 bp)
AGGCACTTCCGCAGATGTTACTGAT
NONE
Os.7095.1.S1_at--1057--2251Chr04:29120129..29120153 (25 bp)
AAATCACAGTCTCTGCATTTGCTCA
NONE
Os.7095.1.S1_at--294--9931Chr04:29120079..29120103 (25 bp)
TACGGAGCACTGAATCTTTCTGCAA
NONE
Os.7095.1.S1_at--868--4991Chr04:29120047..29120071 (25 bp)
GCATGTCAACGTAGCGTCAATCTCA
NONE
Os.7095.1.S1_at--1084--891Chr04:29119942..29119966 (25 bp)
AGGCGTTTGTGTTGTACTGTGTTTA
NONE
Os.7095.1.S1_at--100--4811Chr04:29119881..29119905 (25 bp)
GCTCGGCAAGTTCATATCTATTTTT
NONE
Os.7095.1.S1_at--912--431Chr04:29119866..29119890 (25 bp)
ATCTATTTTTTCTCTAGGGCCTGTT
NONE
Target Sequence 
TTGTGATCCATAAACAGGCCATGCAAAATATATCCTTACATCCGATGCGACGTGTTATACCACTAAAAAAGGTGCTCCTC
TACCCTAGCTTTCTCGAAAAAAATAAAACAAAGTGGAGCACTACCAATCTAGATCTATGTGACGCTAAACAATAGACATG
TGAGTGAAATATGTTTTGACTGATAACTCAGTCCATATATACATAGCATCCAGGCACTTCCGCAGATGTTACTGATGTGC
TCTTTTTTTTTTTAAGATGATGGAACAAAAATCACAGTCTCTGCATTTGCTCATGTGGAGGAAGTCGCAAATCNCCTTTA
CGGAGCACTGAATCTTTCTGCAAAATCTTTGCATGTCAACGTAGCGTCAATCTCAAAATATATTGTTCCAATTTTTATAG
ATACTTATCTCGAGATAGAATATGTGTTTATAGTAGTAAGTGTGCGTGTATTTATAGGCGTTTGTGTTGTACTGTGTTTA
GCAATAATAAAAAAAAACATCTTGTAAAGAGCTGTTGCTCGGCAAGTTCATATCTATTTTTTCTCTAGGGCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7095.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis