Browse Element(s) Details


Os.27330.1.A1_at

Description gb:AK067005.1
DB_XREF= gi:32977023
TID=Os.27330.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092H10, full insert sequence.
FL= gb:AK067005.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4916011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49140Os.57212.1.S1_at11/114+29077378..29078553expressed protein
LOC_Os04g49150Os.2352.1.S1_a_at11/114+29089153..29095022Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os04g49160Os.27330.1.A1_at11/114+29098117..29099361Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49170OsAffx.4126.1.S1_at11/114+29104906..29105424Zinc finger, C3HC4 type family protein
LOC_Os04g49180OsAffx.14337.2.A1_at4/114+29106794..29107138hypothetical protein
LOC_Os04g49194Os.17316.1.S1_at11/114+29112473..29119170oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g49210Os.7095.1.S1_at3/114+29120377..29122074oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0010200biological_processresponse to chitin
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27330.1.A1_at--298--1211Chr04:29098662..29098686 (25 bp)
AGTTTCGTCATTTCAGGCTGTACAT
LOC_Os04g49160
Os.27330.1.A1_at--306--7031Chr04:29098643..29098667 (25 bp)
GTACATCTCGCCATTGTTGCTGGAT
LOC_Os04g49160
Os.27330.1.A1_at--765--7771Chr04:29098617..29098641 (25 bp)
GGTGCAGGCCAACCGCAGACTGATT
LOC_Os04g49160
Os.27330.1.A1_at--678--6431Chr04:29098590..29098614 (25 bp)
GATCAGGACGACTAACCACCAAGCA
LOC_Os04g49160
Os.27330.1.A1_at--572--3451Chr04:29098567..29098591 (25 bp)
CAGTACCGGTGCTAATCAATTGATA
LOC_Os04g49160
Os.27330.1.A1_at--1072--9731Chr04:29098552..29098576 (25 bp)
TCAATTGATAGTTGTGCTCACGCGA
LOC_Os04g49160
Os.27330.1.A1_at--457--71Chr04:29098508..29098532 (25 bp)
ATTCCACGGGTGTACTTTAACGCAT
LOC_Os04g49160
Os.27330.1.A1_at--125--1851Chr04:29098489..29098513 (25 bp)
ACGCATAGTTGCATCCGACGAGCTA
LOC_Os04g49160
Os.27330.1.A1_at--677--5771Chr04:29098473..29098497 (25 bp)
GACGAGCTAGGTAACGTGCACCCGT
LOC_Os04g49160
Os.27330.1.A1_at--690--4551Chr04:29098456..29098480 (25 bp)
GCACCCGTTTAGAGCGAGTACAATG
LOC_Os04g49160
Os.27330.1.A1_at--710--10331Chr04:29098359..29098383 (25 bp)
TTTACAGCCAGCTTCAGCACGGAAT
LOC_Os04g49160
Target Sequence 
AGTTTCGTCATTTCAGGCTGTACATCTCGCCATTGTTGCTGGATGGGTGCAGGCCAACCGCAGACTGATTCCGATCAGGA
CGACTAACCACCAAGCAGTACCGGTGCTAATCAATTGATAGTTGTGCTCACGCGAAAATTAATGGCATTTTGGAATTCCA
CGGGTGTACTTTAACGCATAGTTGCATCCGACGAGCTAGGTAACGTGCACCCGTTTAGAGCGAGTACAATGGCAGGCTAC
AAGTAAGCTATAAGCATACGTGGAAGAGAGAAGAGATAAGAGAGAAGGAAAACAGGCTATATATTTACAGCCAGCTTCAG
CACGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27330.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis