Browse Element(s) Details


Os.57212.1.S1_at

Description gb:AK111145.1
DB_XREF= gi:32996354
TID=Os.57212.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E07, full insert sequence.
FL= gb:AK111145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4914011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49100Os.27639.1.S1_x_at9/114+29049377..29053367transposon protein, putative, unclassified
LOC_Os04g49100OsAffx.8980.1.S1_at5/114+29049377..29053367transposon protein, putative, unclassified
LOC_Os04g49110Os.11843.1.S1_at11/114+29055938..29058170GRAS family transcription factor containing protein, expressed
LOC_Os04g49120OsAffx.26632.1.S1_x_at4/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49120OsAffx.26632.1.S1_at3/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49120Os.26869.1.A1_at2/114+29064191..29067075retrotransposon protein, putative, LINE subclass
LOC_Os04g49130Os.7341.1.S1_at11/114+29070092..29073108Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os04g49140Os.57212.1.S1_at11/114+29077378..29078553expressed protein
LOC_Os04g49150Os.2352.1.S1_a_at11/114+29089153..29095022Agamous-like MADS box protein AGL6, putative, expressed
LOC_Os04g49160Os.27330.1.A1_at11/114+29098117..29099361Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57212.1.S1_at--225--7071Chr04:29077938..29077962 (25 bp)
GTCAACTTCTCGATGGCGGTCCCAG
LOC_Os04g49140
Os.57212.1.S1_at--656--6231Chr04:29077927..29077951 (25 bp)
GATGGCGGTCCCAGCGCTGCAGCCA
LOC_Os04g49140
Os.57212.1.S1_at--215--991Chr04:29077597..29077621 (25 bp)
AGGAGGAGGCGTTGCGCGTGTCCAT
LOC_Os04g49140
Os.57212.1.S1_at--734--6671Chr04:29077587..29077611 (25 bp)
GTTGCGCGTGTCCATGGTCGGGCAC
LOC_Os04g49140
Os.57212.1.S1_at--454--4251Chr04:29077526..29077550 (25 bp)
CCGGACGCCCTCGAGAATGAGTACT
LOC_Os04g49140
Os.57212.1.S1_at--696--3791Chr04:29077517..29077541 (25 bp)
CTCGAGAATGAGTACTGCGCCGCAT
LOC_Os04g49140
Os.57212.1.S1_at--310--7011Chr04:29077506..29077530 (25 bp)
GTACTGCGCCGCATTGTGACAGAGA
LOC_Os04g49140
Os.57212.1.S1_at--561--4511Chr04:29077499..29077523 (25 bp)
GCCGCATTGTGACAGAGAACTGCAA
LOC_Os04g49140
Os.57212.1.S1_at--1061--1571Chr04:29077446..29077470 (25 bp)
AGCTCTCATTTTAGGATTTTCGGTT
LOC_Os04g49140
Os.57212.1.S1_at--3--10451Chr04:29077436..29077460 (25 bp)
TTAGGATTTTCGGTTCATATTCTTT
LOC_Os04g49140
Os.57212.1.S1_at--957--9551Chr04:29077416..29077440 (25 bp)
TCTTTTTTACCTGTGATAATACTAG
LOC_Os04g49140
Target Sequence 
GTCAACTTCTCGATGGCGGTCCCAGCGCTGCAGCCAGGGGCCGTGCCGCTCTGCATGGCCGTGGCGCTGAACGGCAGCGT
CACCGTGACCGACGTGCAGGCCGGGAGCAACACCTGCCACGTGTGGGACCAGGGACACTTCGCGCTCGTCCTGGGCGGAG
CAGGCGACGGCGGCGGCGTGGTGGCGGAGGCCGGCGAGGTGAGCAAGTGGAAGCTGGCGCTCTTCGGGGCGGCGCTCGGC
GCGGGCGGCACGGTGCTCCTGGGGCTGGTCCTGGTGGCGGTGCTGAGCATCCAGCGGCGCAAGTCGGAGGTGGCGGAGAT
GGCGCGGCGGGCGTACGAGGAGGAGGCGTTGCGCGTGTCCATGGTCGGGCACGTCCGCGCGCCGTCGGCGGGCGGGTCGC
GCACCACGCCGGACGCCCTCGAGAATGAGTACTGCGCCGCATTGTGACAGAGAACTGCAAAGAAGCAATTGAAGTTGATT
TTTTTTTAAGCTCTCATTTTAGGATTTTCGGTTCATATTCTTTTTTACCTGTGATAATACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis