Browse Element(s) Details


Os.13860.1.A1_at

Description gb:AK068645.1
DB_XREF= gi:32978662
TID=Os.13860.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158C12, full insert sequence.
FL= gb:AK068645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5547010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein
LOC_Os03g55480NANA3+31501649..31502474hypothetical protein
LOC_Os03g55490Os.27816.1.S1_at11/113+31504991..31509412Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13860.1.A1_at--1096--6751Chr03:31496027..31496051 (25 bp)
GTTCAATATGTACTTTGCTCGCTAA
LOC_Os03g55470
Os.13860.1.A1_at--41--9111NONE
TGCTCGCTAAGCTATCTGGGACAAG
NONE
Os.13860.1.A1_at--126--8571Chr03:31496646..31496670 (25 bp)
TGGTTTCTGACCTCGCAAAAATCGC
LOC_Os03g55470
Os.13860.1.A1_at--135--1371Chr03:31496702..31496726 (25 bp)
AGAGAATTGCTGTCCACACTTGCAT
LOC_Os03g55470
Os.13860.1.A1_at--109--1531Chr03:31496898..31496922 (25 bp)
AGCAGACAACTCTTGACTCACTAAC
LOC_Os03g55470
Os.13860.1.A1_at--955--2251Chr03:31496946..31496970 (25 bp)
AAATCTGGTTGGCTTGCTGGACACC
LOC_Os03g55470
Os.13860.1.A1_at--851--7171Chr03:31497004..31497028 (25 bp)
GTCTGCCGATACAAGTTCTAGCGCT
LOC_Os03g55470
Os.13860.1.A1_at--593--10771Chr03:31497071..31497095 (25 bp)
TTGAGCTATGCCAAGCCTATGTAGA
LOC_Os03g55470
Os.13860.1.A1_at--688--10351Chr03:31497168..31497192 (25 bp)
TTTTTGTTCGTTGGATGACCTTCCG
LOC_Os03g55470
Os.13860.1.A1_at--761--4551Chr03:31497199..31497223 (25 bp)
GCGCCATCAACCATGTCAATGCAAT
LOC_Os03g55470
Os.13860.1.A1_at--1066--1191Chr03:31497226..31497250 (25 bp)
AGTATATCCTCTATTCTTCTATGCC
LOC_Os03g55470
Target Sequence 
GTTCAATATGTACTTTGCTCGCTAAGCTATCTGGGACAAGTATTTTGGTTTCTGACCTCGCAAAAATCGCTACACAAGAG
CGCACTTTAATGGACCAATCCAGAGAATTGCTGTCCACACTTGCATCAATGCACGTCAAATACTGTAGCCTACAAGGNNA
AAGAGTACAGACGACAACTCACAGGAGGCGTGTGCGTTCGTAGAGCAGACAACTCTTGACTCACTAACCGAAGAGTGTAG
GTGCAGTTGCAAAATCTGGTTGGCTTGCTGGACACCGAGCGATCAGACTCTTCTGAAGAAGCTATCGTAGTCTGCCGATA
CAAGTTCTAGCGCTCTTTTGGCCCTTTTTTTGGTTCGGTAGGTTCTTATTGCTGAGTTGAGCTATGCCAAGCCTATGTAG
AACAGATTAAATGCAACTTGTATATAGCTGTAATTTTAGGTGAGCATTAGGTCTAACTAATTTAAGGGTTCTTTTTTTGT
TCGTTGGATGACCTTCCGCCGTCGGCGCCATCAACCATGTCAATGCAATGCAGTATATCCTCTATTCTTCTATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13860.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis