Browse Element(s) Details


Os.13965.1.S1_at

Description gb:AK121108.1
DB_XREF= gi:37990731
TID=Os.13965.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pathogenesis-related protein precursor (B1096D03.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072K01, full insert sequence.
FL= gb:AK121108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2850011/11Pathogenesis-related protein PRMS precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28450Os.418.1.S1_at11/111+16261359..16262183Pathogenesis-related protein PRB1-3 precursor, putative, expressed
LOC_Os01g28460Os.24942.4.A1_x_at6/111+16272370..16273964hypothetical protein
LOC_Os01g28460Os.24942.4.A1_at3/111+16272370..16273964hypothetical protein
LOC_Os01g28474Os.31392.1.S1_at11/111+16275642..16279873Transferase family protein, expressed
LOC_Os01g28490OsAffx.8880.1.S1_at11/111+16282644..16283943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28500Os.13965.1.S1_at11/111+16285609..16286363Pathogenesis-related protein PRMS precursor, putative, expressed
LOC_Os01g28510Os.32238.1.S1_at11/111+16292971..16294510expressed protein
LOC_Os01g28520OsAffx.21119.2.S1_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28520OsAffx.21119.1.S1_s_at11/111+16295213..16296418F-box domain containing protein
LOC_Os01g28530Os.45173.1.S1_x_at3/111+16297336..16299567retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28540Os.27627.1.S1_at10/111+16302192..16307413expressed protein
LOC_Os01g28550NANA1+16310431..16312975retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13965.1.S1_at--1041--4051Chr01:16286156..16286180 (25 bp)
CGATGAGCTGGAGCACGAAGCTGCA
LOC_Os01g28500
Os.13965.1.S1_at--795--5331Chr01:16285984..16286008 (25 bp)
GAAGTACTACAACTACGCCAGCAAC
LOC_Os01g28500
Os.13965.1.S1_at--136--7751Chr01:16285918..16285942 (25 bp)
GGTGTGGCGCGACTCCACCAACGTC
LOC_Os01g28500
Os.13965.1.S1_at--994--411Chr01:16285851..16285875 (25 bp)
ATCATCTGCAACTACGAGCCCCGTG
LOC_Os01g28500
Os.13965.1.S1_at--192--9951Chr01:16285839..16285863 (25 bp)
TACGAGCCCCGTGGCAACATCGTTG
LOC_Os01g28500
Os.13965.1.S1_at--1061--591Chr01:16285809..16285833 (25 bp)
AGGCCCTACTGATCATACGACGTTG
LOC_Os01g28500
Os.13965.1.S1_at--1068--9931Chr01:16285794..16285818 (25 bp)
TACGACGTTGTTGCAACAAGCTATA
LOC_Os01g28500
Os.13965.1.S1_at--17--791Chr01:16285766..16285790 (25 bp)
ATGTGTCTAGCACGCATGCATCGTC
LOC_Os01g28500
Os.13965.1.S1_at--920--9871Chr01:16285731..16285755 (25 bp)
TACATGCACGCGCTGTGTGTTTGTG
LOC_Os01g28500
Os.13965.1.S1_at--173--6091Chr01:16285655..16285679 (25 bp)
GAGTAAATGATGTACTTCAGCTTGG
LOC_Os01g28500
Os.13965.1.S1_at--568--2431Chr01:16285616..16285640 (25 bp)
AAAACCACGATCGATGCGTCTTGCT
LOC_Os01g28500
Target Sequence 
CGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCAC
TCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTG
GGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGG
TGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTNCATCATCTGCAACTA
CGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTA
GCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATA
ACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGT
CTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis