Browse Element(s) Details


Os.14119.1.S1_x_at

Description gb:AK105615.1
DB_XREF= gi:32990824
TID=Os.14119.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0042H09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B10, full insert sequence.
FL= gb:AK105615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g410406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41000Os.52220.1.S1_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41000Os.51877.1.S1_x_at11/1110+21685261..21689413retrotransposon protein, putative, unclassified, expressed
LOC_Os10g41020Os.7510.1.S1_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.7510.1.S2_at11/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41020Os.51877.1.S1_x_at1/1110+21690027..21693601oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g41030Os.18330.1.S2_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S1_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S3_at10/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14119.1.S1_x_at--34--1131Chr10:21710207..21710231 (25 bp)
AGTCCAAGAAGGTGTTCCTGCCGCG
LOC_Os10g41040
Os.14119.1.S1_x_at--86--971Chr10:21710090..21710114 (25 bp)
AGGACGCCATCCAGCGGCTGTGCGT
LOC_Os10g41040
Os.14119.1.S1_x_at--414--1091Chr10:21710024..21710048 (25 bp)
AGTGGCTCCCCTACAACGCCAGGTT
LOC_Os10g41040
Os.14119.1.S1_x_at--916--5611Chr10:21709971..21709995 (25 bp)
GACAAGCCACTCTTCTGAGCAAGAA
LOC_Os10g41040
Os.14119.1.S1_x_at--417--6751Chr10:21709850..21709874 (25 bp)
GTTCAGAAGTGCTACATCTATTTTT
LOC_Os10g41040
Os.14119.1.S1_x_at--511--7291Chr10:21709822..21709846 (25 bp)
GTGCCGTGTACAGAATTGGATTGTT
LOC_Os10g41040
Os.14119.1.S1_x_at--328--91NONE
ATTCCTTGAGAATGTTTGCTGTGTA
NONE
Os.14119.1.S1_x_at--875--8771NONE
TGTTTGCTGTGTATTTGGACTGGAT
NONE
Os.14119.1.S1_x_at--332--6871NONE
GTATTTGGACTGGATGGTTCATTGC
NONE
Os.14119.1.S1_x_at--565--71NONE
ATTGCCAATGGCAGGTAAGACTGGA
NONE
Os.14119.1.S1_x_at--891--3471Chr10:21709724..21709748 (25 bp)
CAGGTAAGACTGGATCGAGCAATTA
NONE
Target Sequence 
AGTCCAAGAAGGTGTTCCTGCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCTC
GCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCG
GAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGNNCATGGTCGACA
AGCCACTCTTCTGAGCAAGAAACNAGCGTACATTCTGATGCNTCCANTGTTTCGCGCTGCATTGTTGTNNNTGTGATCTT
GNAGATGAAGAATTGAAGATGAGATGNNNNCAGTGACAANGTTCAGAAGTGCTACATCTATTTTTNGCTNGTGCCGTGTA
CAGAATTGGATTGTTGCTAATATCTAGTAGCNANTGGATTCCTTGAGAATGTTTGCTGTGTATTTGGACTGGATGGTTCA
TTGCCAATGGCAGGTAAGACTGGATCGAGCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14119.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis