Browse Element(s) Details


Os.14191.1.S1_at

Description gb:AK066535.1
DB_XREF= gi:32976553
TID=Os.14191.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068C11, full insert sequence.
FL= gb:AK120571.1 gb:AK066535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0431011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04280Os.52196.1.S1_at11/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04280OsAffx.17544.1.S1_at1/118+2078228..2087336Actin family protein, expressed
LOC_Os08g04290OsAffx.16823.1.S1_at10/118+2089543..2094035Polycomb group protein FIE2, putative
LOC_Os08g04300Os.50199.1.S1_at11/118+2101974..2105683fringe protein, putative, expressed
LOC_Os08g04310Os.14191.1.S1_at11/118+2109339..2110694Plastocyanin-like domain containing protein, expressed
LOC_Os08g04320OsAffx.25936.1.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.7.S1_s_at11/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.2.S1_x_at4/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04320OsAffx.25936.5.S1_x_at1/118+2112170..2115208transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04330NANA8+2115691..2118666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g04340Os.23207.1.S1_at11/118+2123269..2124255Plastocyanin-like domain containing protein, expressed
LOC_Os08g04350NANA8+2127337..2127962Plastocyanin-like domain containing protein, expressed
LOC_Os08g04360OsAffx.29025.1.S1_at11/118+2131189..2131737Plastocyanin-like domain containing protein, expressed
LOC_Os08g04370OsAffx.29026.1.S1_at11/118+2134038..2134610Plastocyanin-like domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14191.1.S1_at--542--3871Chr08:2109734..2109758 (25 bp)
CTGTGGGACATGGAGACCGACTACA
LOC_Os08g04310
Os.14191.1.S1_at--323--9851Chr08:2109755..2109779 (25 bp)
TACAAAGAGTGGGTCGCTCGCCGGA
LOC_Os08g04310
Os.14191.1.S1_at--826--5611Chr08:2109794..2110255 (25 bp)
GACAAGCTCACGTTCACGTACTCGC
LOC_Os08g04310
Os.14191.1.S1_at--819--1891Chr08:2110246..2110270 (25 bp)
ACGTACTCGCGTGAGCTGCACGACG
LOC_Os08g04310
Os.14191.1.S1_at--14--4311Chr08:2110524..2110548 (25 bp)
CCTAGTCCTCGTGCTCTTGTATGCT
LOC_Os08g04310
Os.14191.1.S1_at--1097--3611Chr08:2110539..2110563 (25 bp)
CTTGTATGCTCTTCTGCCATTGTGG
LOC_Os08g04310
Os.14191.1.S1_at--701--9491Chr08:2110551..2110575 (25 bp)
TCTGCCATTGTGGTAGCATTAATTA
LOC_Os08g04310
Os.14191.1.S1_at--970--1151Chr08:2110579..2110603 (25 bp)
AGTCTCTTGTGTGTATATTTTTGTA
LOC_Os08g04310
Os.14191.1.S1_at--791--1171Chr08:2110616..2110640 (25 bp)
AGTACACGTATATGCTTTGATTTAG
LOC_Os08g04310
Os.14191.1.S1_at--1048--8731Chr08:2110650..2110674 (25 bp)
TGTACTTCTGGTTTTAATTTGTGGT
LOC_Os08g04310
Os.14191.1.S1_at--1079--211Chr08:2110666..2110690 (25 bp)
ATTTGTGGTTATTGATCGGATTTTA
LOC_Os08g04310
Target Sequence 
CTGTGGGACATGGAGACCGACTACAAAGAGTGGGTCGCTCGCCGGACATTCCACCCCGGCGACAAGCTCACGTTCACGTA
CTCGCGTGAGCTGCACGACGTGGTGGAGGTGACGAAGGCGGGGTACGACGCCTGCTCCAACGCCAACAACATCTCCGCCT
TCCGCTCCGGCAACGACCTCGTCGCCCTCACCGCCGTCGGCACCCGCTACTTCCTCTGCGGCCTCACCGGCCACTGCGGC
AGCGGCATGAAGATCCGCATCGACGTCGTCGCCGCCGCCTCCTCCGGCCCCGCAGCCGCCGCCGCGCCGCTGCCGTCGAC
GTCGTCCGTGACCGCCGCCGTCGCCGGAAGCCGCCTAGTCCTCGTGCTCTTGTATGCTCTTCTGCCATTGTGGTAGCATT
AATTAATTAGTCTCTTGTGTGTATATTTTTGTAATTGTAAGTTTAAGTACACGTATATGCTTTGATTTAGTTAATATTTT
GTACTTCTGGTTTTAATTTGTGGTTATTGATCGGATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis