Browse Element(s) Details


Os.14205.1.S1_at

Description gb:AK101499.1
DB_XREF= gi:32986708
TID=Os.14205.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043H15, full insert sequence.
FL= gb:AK101499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4162011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed
LOC_Os05g41680OsAffx.31069.1.S1_x_at1/115+24305904..24307684retrotransposon protein, putative, unclassified
LOC_Os05g41690Os.28943.1.S1_x_at3/115+24308459..24311668retrotransposon protein, putative, unclassified
LOC_Os05g41700NANA5+24312289..24317919retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14205.1.S1_at--296--7391Chr05:24293108..24293132 (25 bp)
GTGAGTCCAGTCAACAGTCATGAAT
LOC_Os05g41620
Os.14205.1.S1_at--764--8171Chr05:24293149..24293173 (25 bp)
GGAAGCTGCCATCTCTGCTGAGGAT
LOC_Os05g41620
Os.14205.1.S1_at--852--2431Chr05:24293200..24293224 (25 bp)
AAAAGATGACATCGGCAGCCTCCTT
LOC_Os05g41620
Os.14205.1.S1_at--969--6571Chr05:24293237..24293261 (25 bp)
GATTCGACTGATTTCGAGGCCTCGC
LOC_Os05g41620
Os.14205.1.S1_at--716--4851Chr05:24293260..24293284 (25 bp)
GCTACGGGATGCTCGCGACTTTGAA
LOC_Os05g41620
Os.14205.1.S1_at--432--5531Chr05:24293294..24293318 (25 bp)
GAAAAACCATCGCATCCTGGACTAG
LOC_Os05g41620
Os.14205.1.S1_at--538--1531Chr05:24293382..24293406 (25 bp)
AGCAGTGATCCTTAGTGTTCTCTTC
LOC_Os05g41620
Os.14205.1.S1_at--78--10051Chr05:24293457..24293481 (25 bp)
TAGTGCTCCGAAGACCTATCCTGTT
LOC_Os05g41620
Os.14205.1.S1_at--676--10091Chr05:24293499..24293523 (25 bp)
TATGTGGCATTTCTGTTGTTTCCCT
LOC_Os05g41620
Os.14205.1.S1_at--15--6651Chr05:24293513..24293537 (25 bp)
GTTGTTTCCCTGATGTACCATGTAT
LOC_Os05g41620
Os.14205.1.S1_at--1147--3411Chr05:24293570..24293594 (25 bp)
CAGATCGTTTCACCTTGTATACCTA
LOC_Os05g41620
Target Sequence 
GTGAGTCCAGTCAACAGTCATGAATCTGGAGATGTGAACATGGAAGCTGCCATCTCTGCTGAGGATGTCTTGCGAGCTGG
TGNTTTCGGAGCAAAAGATGACATCGGCAGCCTCCTTCCCACAGCCGTAGATTCGACTGATTTCGAGGCCTCGCTACGGG
ATGCTCGCGACTTTGAAGGCGAGAGTGAAAAACCATCGCATCCTGGACTAGGATACAAAGCAAATGAAACTGACAGTGGA
GGCAAACCATCAGATGTGCAGCAGCAGCAGCAGCAGCAGTGATCCTTAGTGTTCTCTTCTCCTCCATGCAATTTTAGCTT
TGGATAACATGACNTTCGCCGCGTTCCTCTAGTGCTCCGAAGACCTATCCTGTTCTGACTTTGTGCTAAGGTATGTGGCA
TTTCTGTTGTTTCCCTGATGTACCATGTATGAACGTGACCATGATGATTCTGCTGTATGAACCAGATCGTTTCACCTTGT
ATACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis