Browse Element(s) Details


OsAffx.4591.1.S1_at

Description tigr:9633.m03906
TID=OsAffx.4591.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4166011/11ICE-like protease p20 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed
LOC_Os05g41680OsAffx.31069.1.S1_x_at1/115+24305904..24307684retrotransposon protein, putative, unclassified
LOC_Os05g41690Os.28943.1.S1_x_at3/115+24308459..24311668retrotransposon protein, putative, unclassified
LOC_Os05g41700NANA5+24312289..24317919retrotransposon protein, putative, unclassified
LOC_Os05g41710NANA5+24319344..24319802hypothetical protein
LOC_Os05g41720OsAffx.20387.1.S1_x_at2/115+24321533..24329285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4591.1.S1_at--632--1331Chr05:24300544..24300568 (25 bp)
AGAGGATCAACCACCACGCTCGCAG
LOC_Os05g41660
OsAffx.4591.1.S1_at--580--3771Chr05:24300462..24300486 (25 bp)
CTCTCGACGTTCGTGGAGATGCTCA
LOC_Os05g41660
OsAffx.4591.1.S1_at--209--8111Chr05:24300395..24300419 (25 bp)
GGACGACGCTGTTCCACCACTTCGG
LOC_Os05g41660
OsAffx.4591.1.S1_at--1040--1271Chr05:24300353..24300377 (25 bp)
AGATCAGGCGGCTCGTGAATGCCAT
LOC_Os05g41660
OsAffx.4591.1.S1_at--1086--8991Chr05:24300338..24300362 (25 bp)
TGAATGCCATGCTGGGTCGCAGACA
LOC_Os05g41660
OsAffx.4591.1.S1_at--538--8631Chr05:24300326..24300350 (25 bp)
TGGGTCGCAGACACGGCAGCGCCAC
LOC_Os05g41660
OsAffx.4591.1.S1_at--623--6171Chr05:24300294..24300318 (25 bp)
GAGGAGCACCCGGATAAAGCTAAGC
LOC_Os05g41660
OsAffx.4591.1.S1_at--672--2351Chr05:24300279..24300303 (25 bp)
AAAGCTAAGCCAGAGCGCGTCGACG
LOC_Os05g41660
OsAffx.4591.1.S1_at--165--7711Chr05:24300177..24300201 (25 bp)
GGGTGCCAAACCGACGAGACCTCGG
LOC_Os05g41660
OsAffx.4591.1.S1_at--1042--4351Chr05:24300146..24300170 (25 bp)
CCACCACACCGGAGGGCGTGTCGTA
LOC_Os05g41660
OsAffx.4591.1.S1_at--68--7391Chr05:24300066..24300090 (25 bp)
GTGACCAACATGGAGCTCGTGCGGA
LOC_Os05g41660
Target Sequence 
AGAGGATCAACCACCACGCTCGCAGGCAGAGCTGCTGGCCGCCGACGCGACGCGCGCCGGCATCAAGAACCGGTCGCTGC
CGCTCTCGACGTTCGTGGAGATGCTCAGGGAGAGGACCGGGAAGGACGACGTCGGCGTGGGCTCGATCCGGACGACGCTG
TTCCACCACTTCGGCGACGACGCGAGCCCCAAGATCAGGCGGCTCGTGAATGCCATGCTGGGTCGCAGACACGGCAGCGC
CACGGCGAGCGAGGAGCACCCGGATAAAGCTAAGCCAGAGCGCGTCGACGGCGAGGGCGAGGCGGCGGCGGCGAAGCAAG
GGGCGCCGGAGACGAGGCCGTTGCCGCGCAACGGCGTGCTGATCAGCGGGTGCCAAACCGACGAGACCTCGGCGGACGCC
ACCACACCGGAGGGCGTGTCGTACGGCGCGCTCAGCGACGCCATCCAGAGCGTCCTCGCCGAGGAGCGCCGCGGGAAGGT
GACCAACATGGAGCTCGTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis