Browse Element(s) Details


Os.5532.1.S1_at

Description gb:AK073261.1
DB_XREF= gi:32983284
TID=Os.5532.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5532 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23251 latex-abundant protein-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024G22, full insert sequence.
FL= gb:AY224533.1 gb:AK073261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4167011/11latex-abundant protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed
LOC_Os05g41680OsAffx.31069.1.S1_x_at1/115+24305904..24307684retrotransposon protein, putative, unclassified
LOC_Os05g41690Os.28943.1.S1_x_at3/115+24308459..24311668retrotransposon protein, putative, unclassified
LOC_Os05g41700NANA5+24312289..24317919retrotransposon protein, putative, unclassified
LOC_Os05g41710NANA5+24319344..24319802hypothetical protein
LOC_Os05g41720OsAffx.20387.1.S1_x_at2/115+24321533..24329285retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5532.1.S1_at--113--4571Chr05:24302266..24302290 (25 bp)
GCGCCCTGGCGCAGGAGTTCATGAA
LOC_Os05g41670
Os.5532.1.S1_at--201--9371Chr05:24302206..24302230 (25 bp)
TCGAGCCGGCCATGAAACAGGAGGT
LOC_Os05g41670
Os.5532.1.S1_at--187--1051Chr05:24302185..24302209 (25 bp)
AGGTGCACAGCGTCCACGAGGCGTA
LOC_Os05g41670
Os.5532.1.S1_at--274--8911Chr05:24301987..24302011 (25 bp)
TGAGAGCGCGCGAGTTGTTGTCCAA
LOC_Os05g41670
Os.5532.1.S1_at--918--1671Chr05:24301945..24301969 (25 bp)
AGCCTGGCCTTTACTGCAGTGACAA
LOC_Os05g41670
Os.5532.1.S1_at--709--1491Chr05:24301921..24301945 (25 bp)
AGCACACCAGTGTGGCCTTCATATG
LOC_Os05g41670
Os.5532.1.S1_at--388--4451Chr05:24301907..24301931 (25 bp)
GCCTTCATATGCTGAGAGCCTGGAA
LOC_Os05g41670
Os.5532.1.S1_at--475--3891Chr05:24301876..24301900 (25 bp)
CTGTGCTGCGTGGATTGCTACATAT
LOC_Os05g41670
Os.5532.1.S1_at--125--9091Chr05:24301861..24301885 (25 bp)
TGCTACATATGCGAGAATCTTCCCT
LOC_Os05g41670
Os.5532.1.S1_at--804--3651Chr05:24301838..24301862 (25 bp)
CTTTCCCCTTTGATGTTTTACATTG
LOC_Os05g41670
Os.5532.1.S1_at--1159--4351Chr05:24301701..24301725 (25 bp)
CCAGCCACCGGGAAATGCGATTTGT
LOC_Os05g41670
Target Sequence 
GCGCCCTGGCGCAGGAGTTCATGAAGGCTAAGCTGGAGGGCAACCAGGAGGCGGACGCCCTCGAGCCGGCCATGAAACAG
GAGGTGCACAGCGTCCACGAGGCGTACGCCGGCACGACGGCGAGGGTGAGCAATGGCGTGCTGATNAGCGGGTGCCAGAC
CGACCAGACATCGGCGGACGCCACGACGCCCAAGGGGCGTGTCCTACGGCGCGCTCAGCAACGCCATCCAGACCATCCTG
TCGGAGAAGAGCGNCAGGGTGACGAACAAGGAGCTCGTGCTGAGAGCGCGCGAGTTGTTGTCCAAGCAAGGGTACACCCA
GCAGCCTGGCCTTTACTGCAGTGACAAGCACACCAGTGTGGCCTTCATATGCTGAGAGCCTGGAACATCAGCTGTGCTGC
GTGGATTGCTACATATGCGAGAATCTTCCCTTTCCCCTTTGATGTTTTACATTGTTATGGAGTATGGAGTCTATTTGTTT
TTTAAATGAAAGACAACATGGAGAGTGGTCGACTGTTAATATCAAGAGAAGATGTTACAAAATGACAGTANAATAATCAC
CAAATCCCAGCCACCGGGAAATGCGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis