Browse Element(s) Details


Os.14249.1.S1_a_at

Description gb:AK066504.1
DB_XREF= gi:32976522
TID=Os.14249.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073G20, full insert sequence.
FL= gb:AK066504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4286011/11ATP-dependent RNA helicase ste13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42830NANA2+25740246..25740824retrotransposon protein, putative, unclassified
LOC_Os02g42840NANA2+25741057..25741821retrotransposon protein, putative, LINE subclass
LOC_Os02g42850Os.9971.1.S1_s_at11/112+25753984..25757154Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42860Os.14249.1.S1_a_at11/112+25761430..25768571ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os02g42870Os.55708.1.A1_at11/112+25772210..25774926Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g42880Os.54449.1.S1_at11/112+25783370..25785344Remorin, C-terminal region family protein, expressed
LOC_Os02g42890OsAffx.24693.1.S1_at11/112+25791428..25794151Cytochrome b561 family protein, expressed
LOC_Os02g42890Os.51361.1.S1_at10/112+25791428..25794151Cytochrome b561 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14249.1.S1_a_at--749--5971Chr02:25768023..25768047 (25 bp)
GAGACAGACTACTCTTCCGATGGAC
LOC_Os02g42860
Os.14249.1.S1_a_at--937--8131Chr02:25768044..25768068 (25 bp)
GGACACCTTGTGCTTATATCATTTT
LOC_Os02g42860
Os.14249.1.S1_a_at--656--71Chr02:25768115..25768139 (25 bp)
ATTGCTAGGTGCCTGTTCATGTGCC
LOC_Os02g42860
Os.14249.1.S1_a_at--14--3931Chr02:25768144..25768168 (25 bp)
CTGGCCTCTTAGCTCTTATGATAAT
LOC_Os02g42860
Os.14249.1.S1_a_at--381--6791Chr02:25768190..25768214 (25 bp)
GTTATCGGCTATTTCTCACAGGACA
LOC_Os02g42860
Os.14249.1.S1_a_at--390--9651Chr02:25768258..25768282 (25 bp)
TCAGTGCACACATTCCAGTTGACGT
LOC_Os02g42860
Os.14249.1.S1_a_at--748--5051Chr02:25768341..25768365 (25 bp)
GCAGCACAACAAGCGTCTTCAGATA
LOC_Os02g42860
Os.14249.1.S1_a_at--1148--331Chr02:25768373..25768397 (25 bp)
ATAAATCTGTCGCAAGCCGCGTTTC
LOC_Os02g42860
Os.14249.1.S1_a_at--180--1591Chr02:25768414..25768438 (25 bp)
AGCTCTTCTCTTGCATGAGGCTTGT
LOC_Os02g42860
Os.14249.1.S1_a_at--112--7291Chr02:25768437..25768461 (25 bp)
GTGCCATTATGTTTAGATTCTGCCT
LOC_Os02g42860
Os.14249.1.S1_a_at--201--2391Chr02:25768488..25768512 (25 bp)
AAACTGAGTTTACCTGTCCTGAGAA
LOC_Os02g42860
Target Sequence 
GAGACAGACTACTCTTCCGATGGACACCTTGTGCTTATATCATTTTGGCTAACTAAATTCAAACGCNNTCTCACTGAGGC
ACACAGTAGTGTATATTGCTAGGTGCCTGTTCATGTGCCTGTCCTGGCCTCTTAGCTCTTATGATAATCTCTCCCCTTCT
CTAGATTTCGTTATCGGCTATTTCTCACAGGACATTTTAACCCTGTTAGTGGTTAACTGGTTGTGGGCTGTGCCATGTCA
GTGCACACATTCCAGTTGACGTGCCATCGGGTGTGGACAAGTTCATCCAACTTGTGCTCTGNACTGTCAATGAACAGTAA
GCAGCACAACAAGCGTCTTCAGATATNANCGAATAAATCTGTCGCAAGCCGCGTTTCTGCATCCGTGCCATGCAGCTCTT
CTCTTGCATGAGGCTTGTGCCATTATGTTTAGATTCTGCCTCTTATAATTGAGTCTAATGGTTCTACAAACTGAGTTTAC
CTGTCCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14249.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis