Browse Element(s) Details


Os.14269.1.S1_x_at

Description gb:AK069923.1
DB_XREF= gi:32979947
TID=Os.14269.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035K08, full insert sequence.
FL= gb:AK069923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g535029/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53470Os.10020.1.S1_at10/114+31619083..31622988expressed protein
LOC_Os04g53480Os.35344.18.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480Os.35344.3.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480OsAffx.22940.5.S1_x_at3/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53490Os.33308.1.S1_at11/114+31629431..31631806expressed protein
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed
LOC_Os04g53502Os.14269.1.S1_x_at9/114+31645122..31648340expressed protein
LOC_Os04g53510Os.49169.1.S1_at10/114+31656664..31660643F-box domain containing protein, expressed
LOC_Os04g53520Os.49330.1.S1_at10/114+31661475..31675514expressed protein
LOC_Os04g53520OsAffx.10811.1.A1_at6/114+31661475..31675514expressed protein
LOC_Os04g53520Os.39289.1.S1_at1/114+31661475..31675514expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14269.1.S1_x_at--1098--3071Chr04:31647817..31647841 (25 bp)
AATCACATCATTCTACGCTGCAAGT
LOC_Os04g53502
Os.14269.1.S1_x_at--1148--7291Chr04:31647893..31647917 (25 bp)
GTGCTGACATTCTACAGTTCACCGA
LOC_Os04g53502
Os.14269.1.S1_x_at--776--1211Chr04:31647908..31647932 (25 bp)
AGTTCACCGAGCATGTCCTGGGAAT
LOC_Os04g53502
Os.14269.1.S1_x_at--349--8711Chr04:31647921..31647945 (25 bp)
TGTCCTGGGAATTCTACCGACTCAA
LOC_Os04g53502
Os.14269.1.S1_x_at--150--4791Chr04:31647973..31647997 (25 bp)
GCTGCCTGTTCACACAGCTTATGAA
LOC_Os04g53502
Os.14269.1.S1_x_at--23--5371Chr04:31648027..31648051 (25 bp)
GAAGAACTCTCCGTAACTAATGTGA
LOC_Os04g53502
Os.14269.1.S1_x_at--399--3211NONE
CAAGGACTGCCTACACTTATGGAAA
NONE
Os.14269.1.S1_x_at--334--1191Chr04:31648091..31648116 (25 bp)
AGTTAAACCACAATGTCAGCCGCCA
LOC_Os04g53502
Os.14269.1.S1_x_at--625--6931Chr04:31648121..31648145 (25 bp)
GTAGTTGGGCAGCTCTACTAGCATA
LOC_Os04g53502
Os.14269.1.S1_x_at--649--10251NONE
TTTGTTTGTGGTTCTCTCTAATCCC
NONE
Os.14269.1.S1_x_at--921--10371Chr04:31648207..31648231 (25 bp)
TTTTCTTGCCTTTCTGCTTGAATGT
LOC_Os04g53502
Target Sequence 
AATCACATCATTCTACGCTGCAAGTTAGCCNCTGAAATCTGGAACAAACTCAACCTCCTTGATCAGGCNATTCAGAGTGC
TGACATTCTACAGTTCACCGAGCATGTCCTGGGAATTCTACCGACTCAACTTAAACTGGGATGGCCNATATGCTTCGCTG
CCTGTTCACACAGCTTATGAAAAGCACGCAATCATAGAACCTTCAGAGAAGAAGAACTCTCCGTAACTAATGTGACGCAT
CAAATCAAGGACTGCCTACACTTATGGAAAAACCGAGTTAAACCACAATGTCAGCCGCCAATATGTAGTTGGGCAGCTCT
ACTAGCATAGATGTTGTTTTTCTGTTTGTTTGTGGTTCTCTCTAATCCCTTTCTTCCTTCTTTTCTACCTCTTCTTTTTC
TTGCCTTTCTGCTTGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14269.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis