Browse Element(s) Details


Os.49169.1.S1_at

Description gb:AK101137.1
DB_XREF= gi:32986346
TID=Os.49169.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026J11, full insert sequence.
FL= gb:AK101137.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5351010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53490Os.33308.1.S1_at11/114+31629431..31631806expressed protein
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed
LOC_Os04g53502Os.14269.1.S1_x_at9/114+31645122..31648340expressed protein
LOC_Os04g53510Os.49169.1.S1_at10/114+31656664..31660643F-box domain containing protein, expressed
LOC_Os04g53520Os.49330.1.S1_at10/114+31661475..31675514expressed protein
LOC_Os04g53520OsAffx.10811.1.A1_at6/114+31661475..31675514expressed protein
LOC_Os04g53520Os.39289.1.S1_at1/114+31661475..31675514expressed protein
LOC_Os04g53530Os.24287.1.A1_at11/114+31676191..31681094expressed protein
LOC_Os04g53540Os.12432.1.S1_a_at11/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.57415.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.10246.4.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540OsAffx.29023.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49169.1.S1_at--1113--6931Chr04:31656938..31656962 (25 bp)
GTAGATCTCAAGATACCGTCTTTTT
LOC_Os04g53510
Os.49169.1.S1_at--755--9691Chr04:31656931..31656955 (25 bp)
TCAAGATACCGTCTTTTTGGGAAGG
LOC_Os04g53510
Os.49169.1.S1_at--931--8751Chr04:31656881..31656905 (25 bp)
TGTAGCAGTATATCGCCGAAATTTA
LOC_Os04g53510
Os.49169.1.S1_at--875--10071Chr04:31656858..31656882 (25 bp)
TAGTGATTTCGCTACTTTCTGTGAA
LOC_Os04g53510
Os.49169.1.S1_at--854--7411Chr04:31656827..31656851 (25 bp)
GTGTTTAAGTGCCAAGACAAGTAAT
LOC_Os04g53510
Os.49169.1.S1_at--703--9811Chr04:31656765..31656789 (25 bp)
TAACATAAATTTGTGGCCAGAGTTG
LOC_Os04g53510
Os.49169.1.S1_at--537--351Chr04:31656724..31656748 (25 bp)
ATAATATAACAGAAACCCGCACTTG
LOC_Os04g53510
Os.49169.1.S1_at--623--2611Chr04:31656711..31656735 (25 bp)
AACCCGCACTTGTTTCAGTTGTTTG
LOC_Os04g53510
Os.49169.1.S1_at--605--9651Chr04:31656697..31656721 (25 bp)
TCAGTTGTTTGGTTCATCCGTTCAT
LOC_Os04g53510
Os.49169.1.S1_at--22--3551Chr04:31656683..31656707 (25 bp)
CATCCGTTCATGTATAAGTTTACCA
LOC_Os04g53510
Os.49169.1.S1_at--1009--10451Chr04:31656664..31656688 (25 bp)
TTACCATGTCATTGCTAAACGCTCC
NONE
Target Sequence 
GTAGATCTCAAGATACCGTCTTTTTGGGAAGGAGAAACTGTGAGATAAAATTGGTTNTGTAGCAGTATATCGCCGAAATT
TAGTGATTTCGCTACTTTCTGTGAAAAGGATGTGTTTAAGTGCCAAGACAAGTAATTTAACTTNATATAGTTTGTAATTA
TAAATGTATAATATAACATAAATTTGTGGCCAGAGTTGTATGGAGTATAAATGTATAATATAACAGAAACCCGCACTTGT
TTCAGTTGTTTGGTTCATCCGTTCATGTATAAGTTTACCATGTCATTGCTAAACGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis