Browse Element(s) Details


Os.12432.1.S1_a_at

Description gb:AB101645.1
DB_XREF= gi:31339096
GEN=Roc2
TID=Os.12432.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12432 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Roc2 mRNA for GL2-type homeodomain protein, complete cds.
PROD=GL2-type homeodomain protein
FL= gb:AK101563.1 gb:AB101645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5354011/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53510Os.49169.1.S1_at10/114+31656664..31660643F-box domain containing protein, expressed
LOC_Os04g53520Os.49330.1.S1_at10/114+31661475..31675514expressed protein
LOC_Os04g53520OsAffx.10811.1.A1_at6/114+31661475..31675514expressed protein
LOC_Os04g53520Os.39289.1.S1_at1/114+31661475..31675514expressed protein
LOC_Os04g53530Os.24287.1.A1_at11/114+31676191..31681094expressed protein
LOC_Os04g53540Os.12432.1.S1_a_at11/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.57415.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.10246.4.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540OsAffx.29023.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53544NANA4+31691189..31691506transposon protein, putative, unclassified
LOC_Os04g53550OsAffx.4167.1.S1_at9/114+31706594..31709535Cytochrome c biogenesis ATP-binding export protein ccmA, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12432.1.S1_a_at--813--8371Chr04:31681758..31681782 (25 bp)
GGCGAGAGCAATCCGCAGTAGCTTC
LOC_Os04g53540
Os.12432.1.S1_a_at--259--5031Chr04:31681744..31681768 (25 bp)
GCAGTAGCTTCGTCCTTGAATCAAA
LOC_Os04g53540
Os.12432.1.S1_a_at--834--3131Chr04:31681575..31681599 (25 bp)
AATTTTGGAGCTTTCATCAGTGGGA
LOC_Os04g53540
Os.12432.1.S1_a_at--704--4331Chr04:31681521..31681545 (25 bp)
CCATGTGGTGCCCATATATAGTTTG
LOC_Os04g53540
Os.12432.1.S1_a_at--648--10631Chr04:31681488..31681512 (25 bp)
TTCGCTAGTTTTTCCGCAAATTCGG
LOC_Os04g53540
Os.12432.1.S1_a_at--309--771Chr04:31681448..31681472 (25 bp)
ATGTGTCACCACTACGCAAGGGCGG
LOC_Os04g53540
Os.12432.1.S1_a_at--203--9511Chr04:31681388..31681412 (25 bp)
TCTCGGATGCTGCTACCTTATGAAT
LOC_Os04g53540
Os.12432.1.S1_a_at--170--3111Chr04:31681367..31681391 (25 bp)
GAATTTAGGGTTCTTCTGGAGTACA
LOC_Os04g53540
Os.12432.1.S1_a_at--689--5231Chr04:31681266..31681290 (25 bp)
GAATAGAGATCTGTGTCCCTGTCTT
LOC_Os04g53540
Os.12432.1.S1_a_at--1074--7451Chr04:31681254..31681278 (25 bp)
GTGTCCCTGTCTTATACTTTTAGTT
LOC_Os04g53540
Os.12432.1.S1_a_at--1089--1211Chr04:31681233..31681257 (25 bp)
AGTTCTCTTCAGTGTTTGATCAGTG
LOC_Os04g53540
Target Sequence 
GGCGAGAGCAATCCGCAGTAGCTTCGTCCTTGAATCAAACAAAAGCTTCTTGTGCTTTCAATTTCAGGAGCAGCAAAATT
TTGGAGCTTTCATCAGTGGGAAGTCAAGAACGCACCTCAGACTGTCCTTGCCATGTGGTGCCCATATATAGTTTGGATTA
TTTTTCGCTAGTTTTTCCGCAAATTCGGGAAATTTCAAAAAAAATGTGTCACCACTACGCAAGGGCGGTTGGTTCGGGTA
TTGACTTCCTCTTCATGTTCGCCTCTCGGATGCTGCTACCTTATGAATTTAGGGTTCTTCTGGAGTACAAAAAAAACCCC
TTAATTTGATCTGTAATTTCTGTTGTTCAGACTTCNCAGTNCCTAGCTAGCTAGTAGGAGTNGCAGAATAGAGATCTGTG
TCCCTGTCTTATACTTTTAGTTCTCTTCAGTGTTTGATCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12432.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis