Browse Element(s) Details


OsAffx.4167.1.S1_at

Description tigr:9632.m05197
TID=OsAffx.4167.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=38474-39163
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g535509/11Cytochrome c biogenesis ATP-binding export protein ccmA, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53540Os.12432.1.S1_a_at11/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.57415.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.10246.4.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540OsAffx.29023.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53544NANA4+31691189..31691506transposon protein, putative, unclassified
LOC_Os04g53550OsAffx.4167.1.S1_at9/114+31706594..31709535Cytochrome c biogenesis ATP-binding export protein ccmA, putative
LOC_Os04g53560OsAffx.4168.1.S1_s_at11/114+31713539..31714647expressed protein
LOC_Os04g53580Os.52543.1.S1_at9/114+31718401..31720127p21-rho-binding domain-containing protein, putative, expressed
LOC_Os04g53590OsAffx.22848.4.S1_at2/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53590OsAffx.22848.4.S1_x_at1/114+31726912..31732871retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4167.1.S1_at--531--8551Chr04:31708982..31709006 (25 bp)
TGGAGTACATCATAGCGGAGCACCG
LOC_Os04g53550
OsAffx.4167.1.S1_at--539--3351Chr04:31708930..31708954 (25 bp)
CACGCATTTGCCCATCGAGATTGAG
LOC_Os04g53550
OsAffx.4167.1.S1_at--842--51Chr04:31708911..31708935 (25 bp)
ATTGAGGATGCCATGTCGCTCCGGC
LOC_Os04g53550
OsAffx.4167.1.S1_at--934--2391NONE
AAACTTTGGTTGATCTTGCCTCAGA
NONE
OsAffx.4167.1.S1_at--386--10431Chr04:31707779..31707801 (23 bp)
TTATGAACACTTCTGACCTCTGTGC
LOC_Os04g53550
OsAffx.4167.1.S1_at--801--3851NONE
CTGACCTCTGTGCAGGCTGTAACAA
NONE
OsAffx.4167.1.S1_at--430--5271Chr04:31706858..31706882 (25 bp)
GAATGCTCCACTAATAAGTCCCCAG
LOC_Os04g53550
OsAffx.4167.1.S1_at--1137--5831Chr04:31706832..31706856 (25 bp)
GACCATTGGAGGTGCTATCTGACCC
LOC_Os04g53550
OsAffx.4167.1.S1_at--66--10171Chr04:31706817..31706841 (25 bp)
TATCTGACCCCATGCTGGAAGTAGC
LOC_Os04g53550
OsAffx.4167.1.S1_at--793--2831Chr04:31706799..31706823 (25 bp)
AAGTAGCTGGCCCACTATTCAAGAC
LOC_Os04g53550
OsAffx.4167.1.S1_at--530--5611Chr04:31706678..31706698 (21 bp)
GACAAGGCCCAATCTAGAGGATGCT
LOC_Os04g53550
Target Sequence 
TGGAGTACATCATAGCGGAGCACCGCAAGAAGGGTGGGATCGTGTTCGTCGCCACGCATTTGCCCATCGAGATTGAGGAT
GCCATGTCGCTCCGGCTCCCGCAACGGTTCCCTCGGAGGAAAACTTTGGTTGATCTTGCCTCAGATGTTCTTGGGGAAGT
AGCTTGCTTTGTTGATTTTATGAACACTTCTGACCTCTGTGCAGGCTGTAACAAGGGAGCACTGAATGCTCCACTAATAA
GTCCCCAGGGACCATTGGAGGTGCTATCTGACCCCATGCTGGAAGTAGCTGGCCCACTATTCAAGACAAGGCCCAATCTA
GAGGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis