Browse Element(s) Details


Os.14285.2.S1_at

Description gb:AK063201.1
DB_XREF= gi:32973219
TID=Os.14285.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C08, full insert sequence.
FL= gb:AK063201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein
LOC_Os04g31559NANA4+18687197..18687462NA
LOC_Os04g31570OsAffx.14072.1.S1_at11/114+18687934..18689148F-box protein interaction domain containing protein, expressed
LOC_Os04g31580OsAffx.26271.1.S1_at11/114+18689828..18691402F-box domain containing protein
LOC_Os04g31590OsAffx.32056.1.S1_at11/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31590OsAffx.32056.1.S1_x_at10/114+18699069..18702413transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.1.S1_s_at9/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.3.S1_s_at7/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g31600OsAffx.10637.4.S1_s_at5/114+18704250..18707936transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14285.2.S1_at--485--5331Chr04:18682556..18682580 (25 bp)
GAAGATCCCGTTTGGTCCGTTGCGT
LOC_Os04g31550
Os.14285.2.S1_at--12--9191Chr04:18682627..18682651 (25 bp)
TGCCGTACACCAGGGACTGCAAGGT
LOC_Os04g31550
Os.14285.2.S1_at--736--1991Chr04:18682719..18682743 (25 bp)
ACTCCACGTCGTATACACTATCAAT
LOC_Os04g31550
Os.14285.2.S1_at--765--10871Chr04:18682744..18682768 (25 bp)
TTGGCAGATGCATGTTTGCTGCTGC
LOC_Os04g31550
Os.14285.2.S1_at--732--9051Chr04:18682763..18682787 (25 bp)
TGCTGCTTTCGGTGTACGGGTATAT
LOC_Os04g31550
Os.14285.2.S1_at--669--7431Chr04:18682774..18682798 (25 bp)
GTGTACGGGTATATATGCCTCGAGC
LOC_Os04g31550
Os.14285.2.S1_at--411--3111Chr04:18682799..18682823 (25 bp)
AATATCTGCATTCCCGTGTGACCTC
LOC_Os04g31550
Os.14285.2.S1_at--299--9311Chr04:18682810..18682834 (25 bp)
TCCCGTGTGACCTCGGAAATGTCTG
LOC_Os04g31550
Os.14285.2.S1_at--37--3751Chr04:18682849..18682873 (25 bp)
CTCTCTTTTGGTGTTTTTCATTATA
LOC_Os04g31550
Os.14285.2.S1_at--640--7151Chr04:18682893..18682917 (25 bp)
GTCTATTCAGTTTCAATGGGCCATC
LOC_Os04g31550
Os.14285.2.S1_at--250--1811Chr04:18682924..18682948 (25 bp)
ACCCCGACATCAATCATGGCATTTT
LOC_Os04g31550
Target Sequence 
GAAGATCCCGTTTGGTCCGTTGCGTCCTGACGGGAGCGCCTGCAGGCCGCACTGCCCCGCGAAGTCAGGCCTGCCGTACA
CCAGGGACTGCAAGGTGATCTACCTGTGTGNCAGGGGTCNGCTAAGCTAGCTAGCTATACGACCCCGGCCGCTTCTCTTG
CTGTACTCCACGTCGTATACACTATCAATTTGGCAGATGCATGTTTGCTGCTGCTTTCGGTGTACGGGTATATATGCCTC
GAGCNAATATCTGCATTCCCGTGTGACCTCGGAAATGTCTGNGTTTTTTTTTTCTTCTCTCTTTTGGTGTTTTTCATTAT
ATTCTGGGAAAGTATCAAATGTCTATTCAGTTTCAATGGGCCATCTCTTACACCCCGACATCAATCATGGCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14285.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis