Browse Element(s) Details


Os.14299.1.S1_at

Description gb:AK066670.1
DB_XREF= gi:32976688
TID=Os.14299.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074E02, full insert sequence.
FL= gb:AK068252.1 gb:AK060543.1 gb:AK066670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6012011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60080Os.26695.1.S1_at11/113+34105034..34106478NAC-domain containing protein 19, putative, expressed
LOC_Os03g60090Os.7657.1.S1_at11/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60090OsAffx.17472.1.S1_at1/113+34106735..34112262Methylenetetrahydrofolate reductase, putative, expressed
LOC_Os03g60100Os.7864.1.S1_at11/113+34113713..3411562650S ribosomal protein L17, putative, expressed
LOC_Os03g60110Os.5675.1.S1_at11/113+34125371..34129755KH domain-containing protein, putative, expressed
LOC_Os03g60120Os.14299.1.S1_at11/113+34131362..34132584AP2 domain containing protein, expressed
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14299.1.S1_at--247--8071Chr03:34131928..34131952 (25 bp)
GGAGCTACCCAAGCCAACTATTTCA
LOC_Os03g60120
Os.14299.1.S1_at--550--2651Chr03:34131918..34131942 (25 bp)
AAGCCAACTATTTCACCGCCTGAAG
LOC_Os03g60120
Os.14299.1.S1_at--1001--3171Chr03:34131868..34131892 (25 bp)
AATTGGGACAGCTAAGCCGACCCTT
LOC_Os03g60120
Os.14299.1.S1_at--354--3451Chr03:34131787..34131811 (25 bp)
CAGTAGCTGTGAGGTCCAGGTGCTT
LOC_Os03g60120
Os.14299.1.S1_at--724--10711Chr03:34131764..34131788 (25 bp)
TTGCTCCGGAGCCAATGTGGACGAT
LOC_Os03g60120
Os.14299.1.S1_at--331--3251Chr03:34131730..34131754 (25 bp)
CAAGCGTAAGAAGCGATCGGGCTGT
LOC_Os03g60120
Os.14299.1.S1_at--1158--8411Chr03:34131649..34131673 (25 bp)
GGCCTGAGGGTCCAATTATCCGTAA
LOC_Os03g60120
Os.14299.1.S1_at--653--4191Chr03:34131630..34131654 (25 bp)
CCGTAATTACTATCGTTAGCAGCTT
LOC_Os03g60120
Os.14299.1.S1_at--943--7351Chr03:34131538..34131562 (25 bp)
GTGAAGATGACTCTGCATGTGACCT
LOC_Os03g60120
Os.14299.1.S1_at--560--6331Chr03:34131463..34131487 (25 bp)
GATGCAGTATGGTAGGCTTCGATAA
LOC_Os03g60120
Os.14299.1.S1_at--813--6491Chr03:34131390..34131414 (25 bp)
GATATAGACATGTTCTTCGATTAGA
LOC_Os03g60120
Target Sequence 
GGAGCTACCCAAGCCAACTATTTCACCGCCTGAAGCAGCTGTGAGGCCNATCACCTTGCCAATTGGGACAGCTAAGCCGA
CCCTTCTTCCACGGGTGAAGGAGGAAGGTGAGAGCTGTGGCGGTCGGGTCAAGGAGGAGGCCAGTAGCTGTGAGGTCCAG
GTGCTTGCTCCGGAGCCAATGTGGACGATGATTTCAGGCAAGCGTAAGAAGCGATCGGGCTGTGGAACCCGTGTCCGNGC
CTTCCATGCTGTGTCCGCCNGTGTGGAAGAAGTTGGCGGGGCCTGAGGGTCCAATTATCCGTAATTACTATCGTTAGCAG
CTTTATTGTTATGCATAGCATCATTGGAAACTTGGTATTGTGTAATTTTGGTTAGTATTGAACTTATGATGTGAAGATGA
CTCTGCATGTGACCTGATTTGGTAAGGTTATGATGTGTATATACGGTATGGTTGCTGATATATGTGATGCAGTATGGTAG
GCTTCGATAAGGTGTTNGTGGAATTAGTATGTTGCATCTAAATAAGACCTTTGATGTGAGATATAGACATGTTCTTCGAT
TAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis