Browse Element(s) Details


Os.14318.1.S1_at

Description gb:AK059041.1
DB_XREF= gi:32969059
TID=Os.14318.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D04, full insert sequence.
FL= gb:AK059041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4247010/11bHLH transcription factor GBOF-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42450Os.36874.1.S1_at10/118+26687239..26689248expressed protein
LOC_Os08g42460NANA8+26696917..26697682hypothetical protein
LOC_Os08g42470Os.14318.1.S1_at10/118+26708223..26710424bHLH transcription factor GBOF-1, putative, expressed
LOC_Os08g42480OsAffx.17476.1.S1_x_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480OsAffx.17476.1.S1_at9/118+26717621..26720200hypothetical protein
LOC_Os08g42480Os.51366.1.S1_at1/118+26717621..26720200hypothetical protein
LOC_Os08g42490OsAffx.17477.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490OsAffx.17477.1.S1_s_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42490Os.55514.1.S1_at11/118+26729016..26730005DC1 domain containing protein, expressed
LOC_Os08g42500NANA8+26730547..26732531retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g42510OsAffx.6113.1.S1_at11/118+26733076..26733552hypothetical protein
LOC_Os08g42520OsAffx.6114.1.S1_at11/118+26735039..26737210hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14318.1.S1_at--349--4311Chr08:26709041..26709065 (25 bp)
CCTTGCAATGCCTAATCCAGTACTG
LOC_Os08g42470
Os.14318.1.S1_at--1046--1171Chr08:26709023..26709047 (25 bp)
AGTACTGAACCAATCAAGCCCAGCT
LOC_Os08g42470
Os.14318.1.S1_at--121--1571Chr08:26708990..26709014 (25 bp)
AGCTATCATGGACACAACCTCAACC
LOC_Os08g42470
Os.14318.1.S1_at--43--7431Chr08:26708708..26708732 (25 bp)
GTGTTCAACAACATGTGCTCTTTCC
LOC_Os08g42470
Os.14318.1.S1_at--96--2291Chr08:26708652..26708675 (24 bp)
AAAGGACCCCACATTGACAATAGGA
LOC_Os08g42470
Os.14318.1.S1_at--816--7171Chr08:26708424..26708448 (25 bp)
GTCTGGAGGCAGTCTACAACATTGT
LOC_Os08g42470
Os.14318.1.S1_at--596--231Chr08:26708332..26708356 (25 bp)
ATATTTTGTAGCTCCTTATTTGGTT
LOC_Os08g42470
Os.14318.1.S1_at--607--10191Chr08:26708316..26708340 (25 bp)
TATTTGGTTAGGTTCTGCCCATGAA
LOC_Os08g42470
Os.14318.1.S1_at--1141--651Chr08:26708296..26708320 (25 bp)
ATGAAGATTTCCTCAACGGCTGCAC
LOC_Os08g42470
Os.14318.1.S1_at--76--4371Chr08:26708266..26708290 (25 bp)
CCACCATTGTACTCTACTTCATGAA
LOC_Os08g42470
Os.14318.1.S1_at--1107--1351Chr08:26708221..26708243 (23 bp)
AGAGCTATTGCTACTGTTCCTAAAA
NONE
Target Sequence 
CCTTGCAATGCCTAATCCAGTACTGAACCAATCAAGCCCAGCTCCATCTCAAGCTATCATGGACACAACCTCAACCACAT
CCTACTCACTGCAAAGCCAGCATGGAGCCATCTCTTNCTCTCAGGACAATGNCAGTTACCTGATGCAANCAGTGGGGGAG
CCAAGGCAGCAGGAGATGCTCAATCAATTGGTGTTCAACAACATGTGCTCTTTCCAGTAGGGGAAGAGTGACAGAGAAAG
CAAGAAAAAAGGACCCCACATTGACAATAGGAGGAAATAATAATGCTGCAAGATTGGTAGGAGCATGCAATGCACCAGAT
AAGTTTGAGATGTTGGATCTAGTCCATCCCCTTGTCTGGAGGCAGTCTACAACATTGTAAGAGGATTTTGGAGGGAAGAA
CAGCAAGCGAGTAGAGTTTTCTACACATTTTTCAGAGACTTTGTAATATTTTGTAGCTCCTTATTTGGTTAGGTTCTGCC
CATGAAGATTTCCTCAACGGCTGCACTGCCACCACCATTGTACTCTACTTCATGAAATTATTTTGTTAATATAAAAAGAG
AGCTATTGCTACTGTTCCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis