Browse Element(s) Details


Os.1433.1.S1_at

Description gb:AK070878.1
DB_XREF= gi:32980901
TID=Os.1433.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013G02.21 (P0013G02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065I08, full insert sequence.
FL= gb:AK070878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4034011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40310Os.49896.1.S1_at1/112+24394454..24397332retrotransposon protein, putative, unclassified, expressed
LOC_Os02g40320OsAffx.12428.1.S1_at10/112+24397660..24403443PAZ domain containing protein, expressed
LOC_Os02g40330Os.1433.3.S1_x_at11/112+24403448..24408215expressed protein
LOC_Os02g40330Os.1433.2.S1_at11/112+24403448..24408215expressed protein
LOC_Os02g40340Os.1433.1.S1_at11/112+24421162..24429328expressed protein
LOC_Os02g40340Os.1433.3.S1_x_at5/112+24421162..24429328expressed protein
LOC_Os02g40350Os.20602.2.S1_x_at9/112+24430070..24432250hAT family dimerisation domain containing protein
LOC_Os02g40360Os.40855.5.S1_x_at11/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40360Os.40360.1.S1_at9/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40360Os.40360.1.S1_x_at6/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40370NANA2+24444311..24444550retrotransposon protein, putative, unclassified
LOC_Os02g40380NANA2+24444914..24445246retrotransposon protein, putative, unclassified
LOC_Os02g40390NANA2+24445884..24452039retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1433.1.S1_at--24--5731Chr02:24426758..24426782 (25 bp)
GACTGCCTCTGTTTCAAGTAGTATA
LOC_Os02g40340
Os.1433.1.S1_at--217--4771Chr02:24426715..24426739 (25 bp)
GCTGCAGAATTTGGCTCACTTTGAT
LOC_Os02g40340
Os.1433.1.S1_at--713--2211Chr02:24426668..24426692 (25 bp)
ACAAGCGCTCGATGGCTGCACTGAT
LOC_Os02g40340
Os.1433.1.S1_at--608--6431Chr02:24426646..24426670 (25 bp)
GATCATCCATACAGCTGAGACTTTG
LOC_Os02g40340
Os.1433.1.S1_at--663--9811Chr02:24426526..24426550 (25 bp)
TAACGGGTGGTCTACAGCCTCTGAA
LOC_Os02g40340
Os.1433.1.S1_at--253--8131Chr02:24426407..24426431 (25 bp)
GGACTACAGATCCAAATGTCGCAAT
LOC_Os02g40340
Os.1433.1.S1_at--18--2311Chr02:24426363..24426387 (25 bp)
AAAGGCGATGCTTACACGGACAGTA
LOC_Os02g40340
Os.1433.1.S1_at--798--1615Chr01:31454063..31454087 (25 bp)
AGCTGTGTATTTACTCCCTTCTTGA
NONE
Os.1433.1.S1_at--142--6152Chr02:24426247..24426271 (25 bp)
GAGGGTGCTTTCTTCATATTTGTAT
LOC_Os02g40340
Os.1433.1.S1_at--1015--4872Chr02:24426219..24426243 (25 bp)
GCTTTGTGTATATCTGTTTGGCCCA
LOC_Os02g40340
Os.1433.1.S1_at--269--8452Chr02:24426192..24426216 (25 bp)
TGGCCCATTTAATCTGTGGTCCAAT
LOC_Os02g40340
Target Sequence 
GACTGCCTCTGTTTCAAGTAGTATACAGTACAATGAGGGATATGCTGCAGAATTTGGCTCACTTTGATCCAAACAACTAT
TCAGATAAACACAAGCGCTCGATGGCTGCACTGATCATCCATACAGCTGAGACTTTGAAGAATAAATATATATCAAGTCT
TGTGTTAAATTCTTTCAATCCACATATTGGTGCAAGGCTTCAAGCACTGGATGATATGGGAGCAGCACATATTAACGGGT
GGTCTACAGCCTCTGAATTAATTTTGAAATCCATTCACCTCCCATCAAAGGTTTGGGACTTTCAACAGCAAGAATTTTCC
AAGTGCAATGAATTTTACAAAAATCAGTGCTGGACTACAGATCCAAATGTCGCAATGAAGTCAATTGTGTTTTTAAAAGG
CGATGCTTACACGGACAGTAAGCTTTCTGTTAAAGATGGTGATACGATTACCATATCACATAGTCTGTGTTAGATGTATT
GTATAGCTAGCTGTGTATTTACTCCCTTCTTGAGGGTGCTTTCTTCATATTTGTATTGAGCTTTGTGTATATCTGTTTGG
CCCAGTTGGCCCATTTAATCTGTGGTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis