Browse Element(s) Details


Os.14332.1.S1_at

Description gb:AK064246.1
DB_XREF= gi:32974264
TID=Os.14332.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-B11, full insert sequence.
FL= gb:AK064246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2834011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28300NANA2+16720505..16722125Transferase family protein
LOC_Os02g28310OsAffx.12251.1.S1_at11/112+16726719..16728761hypothetical protein
LOC_Os02g28320NANA2+16730663..16733116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28330OsAffx.20387.1.S1_x_at2/112+16734046..16740439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28340Os.14332.1.S1_at11/112+16744207..16745895Transferase family protein, expressed
LOC_Os02g28340OsAffx.12252.2.S1_x_at2/112+16744207..16745895Transferase family protein, expressed
LOC_Os02g28350OsAffx.19542.3.S1_x_at4/112+16750810..16754575retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28350OsAffx.28278.1.S1_at1/112+16750810..16754575retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28360OsAffx.24474.1.S1_at11/112+16756526..16756807hypothetical protein
LOC_Os02g28370NANA2+16760018..16762117transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28380NANA2+16764486..16767580transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14332.1.S1_at--354--3012Chr02:16745646..16745670 (25 bp)
AATGCAACTAGCGTGGGAACTGCAA
LOC_Os02g28340
Os.14332.1.S1_at--645--1631Chr02:16745655..16745679 (25 bp)
AGCGTGGGAACTGCAACACGTACGT
LOC_Os02g28340
Os.14332.1.S1_at--1064--2471Chr02:16745669..16745693 (25 bp)
AACACGTACGTCGAGTAGATTTCTT
LOC_Os02g28340
Os.14332.1.S1_at--904--6991Chr02:16745674..16745698 (25 bp)
GTACGTCGAGTAGATTTCTTTAGAG
LOC_Os02g28340
Os.14332.1.S1_at--438--6951Chr02:16745683..16745707 (25 bp)
GTAGATTTCTTTAGAGAGATTCGGT
LOC_Os02g28340
Os.14332.1.S1_at--55--2431Chr02:16745756..16745780 (25 bp)
AAAACCTGGGATGAATCCACACATG
LOC_Os02g28340
Os.14332.1.S1_at--519--7991Chr02:16745764..16745788 (25 bp)
GGATGAATCCACACATGTATGTTAA
LOC_Os02g28340
Os.14332.1.S1_at--911--6911Chr02:16745780..16745804 (25 bp)
GTATGTTAATATTCATCCCTTGGGT
LOC_Os02g28340
Os.14332.1.S1_at--328--10211Chr02:16745789..16745813 (25 bp)
TATTCATCCCTTGGGTTTGATTCTT
LOC_Os02g28340
Os.14332.1.S1_at--2--8831Chr02:16745840..16745864 (25 bp)
TGATTGTATTTTTATGCCTACTACT
LOC_Os02g28340
Os.14332.1.S1_at--375--571Chr02:16745853..16745877 (25 bp)
ATGCCTACTACTTTTAAAATTCTAG
LOC_Os02g28340
Target Sequence 
AATGCAACTAGCGTGGGAACTGCAACACGTACGTCGAGTAGATTTCTTTAGAGAGATTCGGTTTTCATGTCTTTTTGCTG
GCTTATACTCTCTCTGTGAAAAAAGAAATCAAAACCTGGGATGAATCCACACATGTATGTTAATATTCATCCCTTGGGTT
TGATTCTTTTTAGAACTTTATAATTTAATTTTGGTGATTGTATTTTTATGCCTACTACTTTTAAAATTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis