Browse Element(s) Details


OsAffx.24474.1.S1_at

Description tigr:9630.m02700
TID=OsAffx.24474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2836011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g28320NANA2+16730663..16733116retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28330OsAffx.20387.1.S1_x_at2/112+16734046..16740439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28340Os.14332.1.S1_at11/112+16744207..16745895Transferase family protein, expressed
LOC_Os02g28340OsAffx.12252.2.S1_x_at2/112+16744207..16745895Transferase family protein, expressed
LOC_Os02g28350OsAffx.19542.3.S1_x_at4/112+16750810..16754575retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28350OsAffx.28278.1.S1_at1/112+16750810..16754575retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g28360OsAffx.24474.1.S1_at11/112+16756526..16756807hypothetical protein
LOC_Os02g28370NANA2+16760018..16762117transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28380NANA2+16764486..16767580transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g28389NANA2+16772063..16772605NA
LOC_Os02g28400OsAffx.8319.1.S1_x_at3/112+16777308..16787072retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g28400OsAffx.8319.1.S1_at1/112+16777308..16787072retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24474.1.S1_at--444--2411Chr02:16756563..16756587 (25 bp)
AAACACCTGCATACTTAGCCTTTGG
LOC_Os02g28360
OsAffx.24474.1.S1_at--182--10451Chr02:16756577..16756601 (25 bp)
TTAGCCTTTGGACGGCACCGCTACA
LOC_Os02g28360
OsAffx.24474.1.S1_at--245--8251Chr02:16756590..16756614 (25 bp)
GGCACCGCTACATGATCCTCACATG
LOC_Os02g28360
OsAffx.24474.1.S1_at--817--9691Chr02:16756608..16756632 (25 bp)
TCACATGCTCCACGCTCAAAGAAGG
LOC_Os02g28360
OsAffx.24474.1.S1_at--600--3351Chr02:16756618..16756642 (25 bp)
CACGCTCAAAGAAGGCGACCGCGCT
LOC_Os02g28360
OsAffx.24474.1.S1_at--706--2331Chr02:16756660..16756684 (25 bp)
AAAGAAGCTGGCCTCCTTTTCCTCA
LOC_Os02g28360
OsAffx.24474.1.S1_at--586--10291Chr02:16756677..16756701 (25 bp)
TTTCCTCACCAGAACACATATCTCA
LOC_Os02g28360
OsAffx.24474.1.S1_at--313--5611Chr02:16756707..16756731 (25 bp)
GACAACCGACGAGCTCGATCGGAAA
LOC_Os02g28360
OsAffx.24474.1.S1_at--501--9391Chr02:16756721..16756745 (25 bp)
TCGATCGGAAATAGCTTCCCTCCAA
LOC_Os02g28360
OsAffx.24474.1.S1_at--33--9312Chr12:21441002..21441027 (25 bp)
TCCCTCCAACCAGTGAGTTCAAGGA
NONE
OsAffx.24474.1.S1_at--1033--6751Chr02:16756753..16756777 (25 bp)
GTTCAAGGAGAGCTCGCTAGCAGCA
LOC_Os02g28360
Target Sequence 
AAACACCTGCATACTTAGCCTTTGGACGGCACCGCTACATGATCCTCACATGCTCCACGCTCAAAGAAGGCGACCGCGCT
CACCCCAAGCACAAAATAAAGAAGCTGGCCTCCTTTTCCTCACCAGAACACATATCTCACCCCCGACAACCGACGAGCTC
GATCGGAAATAGCTTCCCTCCAACCAGTGAGTTCAAGGAGAGCTCGCTAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis