Browse Element(s) Details


Os.14368.1.S1_at

Description gb:AK099874.1
DB_XREF= gi:32985083
TID=Os.14368.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.14368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111G22, full insert sequence.
FL= gb:AK058264.1 gb:AK099874.1 gb:AK060624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2937011/11Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29340OsAffx.29416.1.S1_at10/118+17862857..17864777hypothetical protein
LOC_Os08g29350OsAffx.17224.1.S1_at11/118+17865710..17867344hypothetical protein
LOC_Os08g29360NANA8+17874268..17879037retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29370Os.14368.1.S1_at11/118+17887239..17891069Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os08g29380NANA8+17892008..17892280hypothetical protein
LOC_Os08g29390NANA8+17893326..17894109hypothetical protein
LOC_Os08g29400OsAffx.5976.1.S1_at11/118+17894936..17898059F-box domain containing protein, expressed
LOC_Os08g29400Os.49204.1.S1_x_at7/118+17894936..17898059F-box domain containing protein, expressed
LOC_Os08g29410Os.14919.1.S1_at2/118+17899819..17901030hypothetical protein
LOC_Os08g29420Os.52731.1.S1_at1/118+17903439..17906747retrotransposon protein, putative, unclassified
LOC_Os08g29420OsAffx.22699.1.S1_x_at1/118+17903439..17906747retrotransposon protein, putative, unclassified
LOC_Os08g29430OsAffx.16451.1.A1_x_at1/118+17910102..17913502retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14368.1.S1_at--840--7931Chr08:17890255..17890279 (25 bp)
GGATTTATTGATCCCAGTACTGGTA
LOC_Os08g29370
Os.14368.1.S1_at--959--2671Chr08:17890280..17890304 (25 bp)
AAGTTCGTACAATACCTCTTGAGTT
LOC_Os08g29370
Os.14368.1.S1_at--789--7211Chr08:17890309..17890333 (25 bp)
GTCGATGGTGACAAAGCGCCTGTAT
LOC_Os08g29370
Os.14368.1.S1_at--195--5491Chr08:17890458..17890482 (25 bp)
GAACTTGGCCGCTACAAGGCTCAAA
LOC_Os08g29370
Os.14368.1.S1_at--454--10771Chr08:17890634..17890658 (25 bp)
TTGATGACAATTCTGCTTCTAGCCA
LOC_Os08g29370
Os.14368.1.S1_at--423--4231Chr08:17890727..17890751 (25 bp)
CCGTATTTGGATATGTCACCGAGAA
LOC_Os08g29370
Os.14368.1.S1_at--42--8131Chr08:17890755..17890779 (25 bp)
GGACTACTTGGCAGACCTCAAGGTT
LOC_Os08g29370
Os.14368.1.S1_at--1061--5251Chr08:17890792..17890816 (25 bp)
GAATCGATTCAAGTTGTCTCAGGCT
LOC_Os08g29370
Os.14368.1.S1_at--562--4271Chr08:17890824..17890848 (25 bp)
CCTCGCCAACCCAAGCTATAAGATT
LOC_Os08g29370
Os.14368.1.S1_at--864--2851Chr08:17890921..17890945 (25 bp)
AAGTGCTATAATCTCTAACCCTCAT
LOC_Os08g29370
Os.14368.1.S1_at--956--451Chr08:17890944..17890968 (25 bp)
ATCTCATGACCTTCTATGTTTTGTG
LOC_Os08g29370
Target Sequence 
GGATTTATTGATCCCAGTACTGGTAAAGTTCGTACAATACCTCTTGAGTTAATGGTCGATGGTGACAAAGCGCCTGTATA
TGGTGAAACACTTGAANNNNNNNNNNNNNNNNNNNNNGAACTTGGCCGCTACAAGGCTCAAACAAAGCTTCCTTTTAATG
CATTTGGAACAATGGCAATGGCTAGAGATGAATTTGATGACAATTCTGCTTCTAGCCAAATCTTTTGGTTGTTAAAAGAG
AGTGAGCTAACACCAAGCAATGCCAATATACTGGATGGGCGGTATGCCGTATTTGGATATGTCACCGAGAACGAGGACTA
CTTGGCAGACCTCAAGGTTGGGGATGTCATTGAATCGATTCAAGTTGTCTCAGGCTTAGACAACCTCGCCAACCCAAGCT
ATAAGATTGTAGGATAAAATGTTTCTTTTTTTCAGGAGTTCCTTGATAGGCAATTATTTTACCATATTGAAATCAGTGTA
AAGTGCTATAATCTCTAACCCTCATCTCATGACCTTCTATGTTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis