Browse Element(s) Details


OsAffx.5976.1.S1_at

Description tigr:9636.m02917
TID=OsAffx.5976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2940011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29360NANA8+17874268..17879037retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29370Os.14368.1.S1_at11/118+17887239..17891069Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os08g29380NANA8+17892008..17892280hypothetical protein
LOC_Os08g29390NANA8+17893326..17894109hypothetical protein
LOC_Os08g29400OsAffx.5976.1.S1_at11/118+17894936..17898059F-box domain containing protein, expressed
LOC_Os08g29400Os.49204.1.S1_x_at7/118+17894936..17898059F-box domain containing protein, expressed
LOC_Os08g29410Os.14919.1.S1_at2/118+17899819..17901030hypothetical protein
LOC_Os08g29420Os.52731.1.S1_at1/118+17903439..17906747retrotransposon protein, putative, unclassified
LOC_Os08g29420OsAffx.22699.1.S1_x_at1/118+17903439..17906747retrotransposon protein, putative, unclassified
LOC_Os08g29430OsAffx.16451.1.A1_x_at1/118+17910102..17913502retrotransposon protein, putative, unclassified
LOC_Os08g29440NANA8+17916310..17917137hypothetical protein
LOC_Os08g29450OsAffx.31867.1.S1_x_at1/118+17921691..17922134hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5976.1.S1_at--41--9891Chr08:17896639..17896663 (25 bp)
TACTGACACGTACCCTCAAGTTGAA
LOC_Os08g29400
OsAffx.5976.1.S1_at--1120--3851Chr08:17896683..17896707 (25 bp)
CTGAGCTTGGCGGTCAACTATGTGC
LOC_Os08g29400
OsAffx.5976.1.S1_at--51--4691Chr08:17896692..17896716 (25 bp)
GCGGTCAACTATGTGCTACTTTCTT
LOC_Os08g29400
OsAffx.5976.1.S1_at--629--6891Chr08:17896740..17896764 (25 bp)
GTATCTACATGTCAGGAGATGTCAT
LOC_Os08g29400
OsAffx.5976.1.S1_at--338--6031Chr08:17896755..17896779 (25 bp)
GAGATGTCATGGATCCAGATTGGAA
LOC_Os08g29400
OsAffx.5976.1.S1_at--115--3171Chr08:17896805..17896829 (25 bp)
AATTGCTATCCAATAGCCTCGCTTG
LOC_Os08g29400
OsAffx.5976.1.S1_at--526--3611Chr08:17896826..17896850 (25 bp)
CTTGGCAGCGGTCGGATTTTATTGA
LOC_Os08g29400
OsAffx.5976.1.S1_at--812--8051Chr08:17896851..17896875 (25 bp)
GGAGAGGTAGTCTTGTCTTCTGTAC
LOC_Os08g29400
OsAffx.5976.1.S1_at--259--7151Chr08:17896865..17896889 (25 bp)
GTCTTCTGTACTAATCTGAAATCGT
LOC_Os08g29400
OsAffx.5976.1.S1_at--388--4511Chr08:17897987..17898011 (25 bp)
GCCGTTGTCGGCCAAAATTACATTT
LOC_Os08g29400
OsAffx.5976.1.S1_at--985--3278Chr12:2126058..2126150 (25 bp)
CAAAATTACATTTAGCCCCTTGCCG
NONE
Target Sequence 
TACTGACACGTACCCTCAAGTTGAAGATGATGAAGTTACAATTACTGAGCTTGGCGGTCAACTATGTGCTACTTTCTTTT
GCAATACTCTGCAACAAGTATGTATCTACATGTCAGGAGATGTCATGGATCCAGATTGGAATTGTTGGCATATAATAAAC
TTTATGAATTGCTATCCAATAGCCTCGCTTGGCAGCGGTCGGATTTTATTGAGGAGAGGTAGTCTTGTCTTCTGTACTAA
TCTGAAATCGTACAGCATAGAAGATAAATTGGATATTGATGATATAAGAAATAATCTATCGGCGTTAAAAATTACAAAAA
TAGACCCTGCCGCCTCAGTGGTGGGCGGCAAGCTGACGTGGCAGACGGCGGCTCGACCACGCCGTCTGCCGTTGTCGGCC
AAAATTACATTTAGCCCCTTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis