Browse Element(s) Details


Os.14390.1.S1_at

Description gb:AK071349.1
DB_XREF= gi:32981372
TID=Os.14390.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093G22, full insert sequence.
FL= gb:AK071349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1138011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11330Os.49837.1.S1_a_at9/116+5951600..5962310SRF-type transcription factor family protein, expressed
LOC_Os06g11340NANA6+5964519..5966760retrotransposon, putative, centromere-specific
LOC_Os06g11350NANA6+5968231..5969041retrotransposon, putative, centromere-specific
LOC_Os06g11360OsAffx.11821.1.S1_at1/116+5974646..5975460hypothetical protein
LOC_Os06g11360OsAffx.8723.1.S1_at1/116+5974646..5975460hypothetical protein
LOC_Os06g11370Os.32942.1.S1_at9/116+5976442..5979609MED6 mediator sub complex component family protein, expressed
LOC_Os06g11380Os.14390.1.S1_at11/116+5981670..5986672kinesin motor protein, putative, expressed
LOC_Os06g11390OsAffx.15368.1.S1_at11/116+6002867..6003975hypothetical protein
LOC_Os06g11400Os.14423.1.S1_at11/116+6006464..6009098expressed protein
LOC_Os06g11400Os.14423.1.S1_x_at9/116+6006464..6009098expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14390.1.S1_at--959--6751Chr06:5982231..5982255 (25 bp)
GTTCAACACTGGAACATCAGCCCCA
LOC_Os06g11380
Os.14390.1.S1_at--371--2091Chr06:5982218..5982242 (25 bp)
ACATCAGCCCCATTCATCATAAAAT
LOC_Os06g11380
Os.14390.1.S1_at--583--91Chr06:5982184..5982208 (25 bp)
ATTCGAGCTGTGAACTGGTCATTAA
LOC_Os06g11380
Os.14390.1.S1_at--117--1191Chr06:5981955..5981979 (25 bp)
AGTACCAGCCTTGAAAGACATCGTT
LOC_Os06g11380
Os.14390.1.S1_at--605--6431Chr06:5981893..5981917 (25 bp)
GATCATAGTTTTAGTTCATTCTTAG
LOC_Os06g11380
Os.14390.1.S1_at--1061--6811Chr06:5981867..5981891 (25 bp)
GTTTATATATTACTCCCTATGTTGT
LOC_Os06g11380
Os.14390.1.S1_at--1121--3151Chr06:5981831..5981855 (25 bp)
AATTGAGGGCATTCGGTGTAACTTC
LOC_Os06g11380
Os.14390.1.S1_at--973--10371Chr06:5981760..5981784 (25 bp)
TTTTGGTCGAGAGAGTTACTTTGCC
LOC_Os06g11380
Os.14390.1.S1_at--836--6771Chr06:5981746..5981770 (25 bp)
GTTACTTTGCCTCTCTGATTGCCAT
LOC_Os06g11380
Os.14390.1.S1_at--404--6591Chr06:5981730..5981754 (25 bp)
GATTGCCATACTCAGGATGCTTGAT
LOC_Os06g11380
Os.14390.1.S1_at--893--5071Chr06:5981689..5981713 (25 bp)
GCAGCCGTAGCTGATAAATGCTTGT
LOC_Os06g11380
Target Sequence 
GTTCAACACTGGAACATCAGCCCCATTCATCATAAAATGTGGAGCAAATTCGAGCTGTGAACTGGTCATTAAGGCTGACC
AAAAAATTCAGGAACCTAAAGGTGATGAGATAATCCGANTTGTTCCNAAAGCCATCAGTTCTNGCAGAAATGANGCTNTT
GAGGAAATAAAAGGTGTCTTTGAGGAATTACCNAGAANCAATCAGCTTGCTTGCCCNTGGCACGAACCGCCNGATGNGTA
CAAGAGCCNAGATATTNNTAGACNTGTACNAGAACTCTAGCTAACAAAGTACCAGCCTTGAAAGACATCGTTNCGGAGAT
GGAGAAAGGTGGTGTTTTCAAGGATGTCNAGATCATAGTTTTAGTTCATTCTTAGAGTTTATATATTACTCCCTATGTTG
TATATGGATGCCNAATTGAGGGCATTCGGTGTAACTTCCNTTTTTTTTGTTTATACAATGAACAAGCCTATGTTGTAACA
TTATTTTTTGGTCGAGAGAGTTACTTTGCCTCTCTGATTGCCATACTCAGGATGCTTGATGTTTCATAATATTAAGGCAG
CCGTAGCTGATAAATGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis