Browse Element(s) Details


Os.32942.1.S1_at

Description gb:AK102305.1
DB_XREF= gi:32987514
TID=Os.32942.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089P03, full insert sequence.
FL= gb:AK102305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g113709/11MED6 mediator sub complex component family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11330Os.49837.1.S1_a_at9/116+5951600..5962310SRF-type transcription factor family protein, expressed
LOC_Os06g11340NANA6+5964519..5966760retrotransposon, putative, centromere-specific
LOC_Os06g11350NANA6+5968231..5969041retrotransposon, putative, centromere-specific
LOC_Os06g11360OsAffx.11821.1.S1_at1/116+5974646..5975460hypothetical protein
LOC_Os06g11360OsAffx.8723.1.S1_at1/116+5974646..5975460hypothetical protein
LOC_Os06g11370Os.32942.1.S1_at9/116+5976442..5979609MED6 mediator sub complex component family protein, expressed
LOC_Os06g11380Os.14390.1.S1_at11/116+5981670..5986672kinesin motor protein, putative, expressed
LOC_Os06g11390OsAffx.15368.1.S1_at11/116+6002867..6003975hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32942.1.S1_at--1155--391Chr06:5978886..5978907 (22 bp)
ATCAGTAGGGCTATGCATCACATCT
LOC_Os06g11370
Os.32942.1.S1_at--528--2351Chr06:5978859..5978883 (25 bp)
AAAGCTTTTACTACGGCATGTTCAA
LOC_Os06g11370
Os.32942.1.S1_at--74--7711Chr06:5977036..5977060 (25 bp)
GGGTCGACCATATCCTAATGTCGTT
LOC_Os06g11370
Os.32942.1.S1_at--611--5131Chr06:5976750..5977035 (25 bp)
GCAAAGGAAGCTGCAACCTGCTCCT
LOC_Os06g11370
Os.32942.1.S1_at--1123--1291Chr06:5976672..5976696 (25 bp)
AGATGATCTGTTGGCCTCAGAGGCA
LOC_Os06g11370
Os.32942.1.S1_at--370--9291Chr06:5976642..5976666 (25 bp)
TCCCCAGGTTGATCCTATCATTGAT
LOC_Os06g11370
Os.32942.1.S1_at--641--10271Chr06:5976560..5976584 (25 bp)
TTTGACTAACACCACAATTACCTGT
LOC_Os06g11370
Os.32942.1.S1_at--32--10451Chr06:5976520..5976544 (25 bp)
TTAGATTCTTTCAGTTCCACAGCTC
LOC_Os06g11370
Os.32942.1.S1_at--653--6611Chr06:5976480..5976504 (25 bp)
GTTGTGGTTTCAGTCGTAATGGTTA
LOC_Os06g11370
Os.32942.1.S1_at--598--131Chr06:5976421..5976445 (25 bp)
ATTAGGTGGTACTGGCTGTTTGTCA
NONE
Os.32942.1.S1_at--750--10811Chr06:5976402..5976426 (25 bp)
TTGTCAGGCCTGTTTCTACTGTGCT
NONE
Target Sequence 
ATCAGTAGGGCTATGCATCACATCTNAAAAGCTTTTACTACGGCATGTTCAAAGTTGGAGAAAATTGGGCATGTGGNAAA
CAGAGCCTGACACAGCAGCTTNTNGAATCAAAGACGCAGAAGGAAGCAATTNATTTGAAGGNAGTTGAAGNCGGGTCGAC
CATATCCTAATGTCGTTGCAAAGGAAGCTGCAACCTGCTCCTCCCCCTCCACCTTTTCCAGAGGGNTATGNNCCATCAGA
ACAAGAGAAAGCATCAGATGATCTGTTGGCCTCAGAGGCACTGCCTCCCCAGGTTGATCCTATCATTGATCAAGGCCCTG
CAAAAAGGCCTAGATTCCAATGAGAGAGGTTGCATTGATAAGTTAAATTTGACTAACACCACAATTACCTGTGTTGTAAG
TTGATGATTAGATTCTTTCAGTTCCACAGCTCGGAAGTTAAATATAAGTTGTGGTTTCAGTCGTAATGGTTATTTTGAAG
GATAAATTCAAGGGAGCATAAATCTGATTAGGTGGTACTGGCTGTTTGTCAGGCCTGTTTCTACTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis